PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4184_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 192aa    MW: 22051.5 Da    PI: 11.0059
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4184_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.3e-11951771396
                                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                         +  l++p + ++++g +++ + + tl+d++gr+W  + + +  +++++  +GW +F++ n + ++D +v ++++ 
  cra_locus_4184_iso_2_len_795_ver_3  95 REELYVPIEVLKDIG-VTRLPPKATLRDSKGRTWVTYRTKWHDGREFF-VGGWASFCRMNFVGDNDQCVCEFVKG 167
                                         567899999998885.6678889***********87777777777765.56********************8855 PP

                                         .SEE..EEEE CS
                                  B3  88 .sefelvvkv 96 
                                          ++ el +++
  cra_locus_4184_iso_2_len_795_ver_3 168 nKKNELIIQI 177
                                         5888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-1481170IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-1581168IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.58783181IPR003340B3 DNA binding domain
CDDcd100171.92E-984177No hitNo description
SMARTSM010190.009886181IPR003340B3 DNA binding domain
PfamPF023628.9E-1095177IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
QENRRFQKQL KRELSILRKE VATLTRKVGE TESKDTNGGS RKSSRMKELP VQKPAGAKRG  60
RRKNPDYYGS AIFRSGILPL PKNPYFVAGV RPKRREELYV PIEVLKDIGV TRLPPKATLR  120
DSKGRTWVTY RTKWHDGREF FVGGWASFCR MNFVGDNDQC VCEFVKGNKK NELIIQIQVV  180
PTINNAKLQK TA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351837.18e-36PREDICTED: B3 domain-containing protein At5g60140-like
TrEMBLM1AQ142e-34M1AQ14_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000276733e-35(Solanum tuberosum)