PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_42252_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 120aa MW: 13606.3 Da PI: 8.7142

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_42252_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.9	2e-39	2	97	5	100
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 Ck lrrkC+++Cv+apyfp +qp+kf nvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg cra_locus_42252_iso_2_len_357_ver_3 2 CKCLRRKCTQECVFAPYFPPDQPQKFINVHKVFGASNVAKLLNDLNASQREDAVNSLAYEAEYRLRDPVYGCVG 75 ************************************************************************ PP DUF260 79 vilklqqqleqlkaelallkee 100 +i+ lq++l+q + +l ++k+e cra_locus_42252_iso_2_len_357_ver_3 76 LISVLQHRLKQIQYDLYSAKKE 97 *************9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.188	1	98	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-39	2	95	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
XCKCLRRKCT QECVFAPYFP PDQPQKFINV HKVFGASNVA KLLNDLNASQ REDAVNSLAY 60 EAEYRLRDPV YGCVGLISVL QHRLKQIQYD LYSAKKELAS YIGPSAMLPI LQPAGFMQQX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-45	2	101	15	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-45	2	101	15	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554582.1	9e-73	LOB domain-containing protein 36
Swissprot	Q9FKZ3	6e-65	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A314L3T6	4e-70	A0A314L3T6_NICAT; Lob domain-containing protein 36
STRING	XP_009792980.1	8e-71	(Nicotiana sylvestris)

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]