PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4230_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 416aa MW: 47550 Da PI: 5.4562

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4230_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.4	3.5e-15	71	141	21	99
HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +f++ h +++++ ++lede+g+++e+k+i +k++ l++GW++Fv+a++L egD++vF+l++ ++f +v cra_locus_4230_iso_2_len_1651_ver_3 71 PFCKLHL--PRNDTPVVLEDENGEKFEIKYIAEKTG----LSAGWRKFVSAHKLVEGDVLVFQLISPTTF--KV 136 5776663..234556*************777777....**********************986666..77 PP EEE-S CS B3 95 kvfrk 99 v+r+ cra_locus_4230_iso_2_len_1651_ver_3 137 YVVRA 141 77765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	2.5E-11	62	142	IPR003340	B3 DNA binding domain
CDD	cd10017	3.33E-17	69	140	No hit	No description
SuperFamily	SSF101936	9.42E-17	70	142	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.7E-15	71	142	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.3E-12	72	140	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.857	84	142	IPR003340	B3 DNA binding domain
Pfam	PF05266	2.9E-8	289	402	IPR007930	Protein of unknown function DUF724

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MRLKIKQVQP SPSPDFQNQE NHLDLDVMKK EIEENDNDKG NGCGWLNPEE NNSNNKSPPP 60 PDLSPTTPSV PFCKLHLPRN DTPVVLEDEN GEKFEIKYIA EKTGLSAGWR KFVSAHKLVE 120 GDVLVFQLIS PTTFKVYVVR ANDMNEVDGA LSLLNLETLT KQGDAGGAMD LKNKKKKRQK 180 SLPLTVVQKK KQKADLSKSL VPHLGQLEEQ SGGNDSDEVA SEVLECTKFL GEAGRFRDIK 240 SFEDFHISVN GVCIDSELPE HVRRKYYELC CSKEAFLHER FLPGLHCKLA AGIIFEAVNT 300 TDAIKACKIT TSREEFEKWE KSLRSFELLG MNVGFLRERL RRLQTLVFDV EDARETKRYW 360 EAKTERAQTE DEIRNLEAKL EELKEVSMRY DADIEVLRSK AENYELMFQR EVNAPW

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MRLKIKQVQP SPSPDFQNQE NHLDLDVMKK EIEENDNDKG NGCGWLNPEE NNSNNKSPPP  60
PDLSPTTPSV PFCKLHLPRN DTPVVLEDEN GEKFEIKYIA EKTGLSAGWR KFVSAHKLVE  120
GDVLVFQLIS PTTFKVYVVR ANDMNEVDGA LSLLNLETLT KQGDAGGAMD LKNKKKKRQK  180
SLPLTVVQKK KQKADLSKSL VPHLGQLEEQ SGGNDSDEVA SEVLECTKFL GEAGRFRDIK  240
SFEDFHISVN GVCIDSELPE HVRRKYYELC CSKEAFLHER FLPGLHCKLA AGIIFEAVNT  300
TDAIKACKIT TSREEFEKWE KSLRSFELLG MNVGFLRERL RRLQTLVFDV EDARETKRYW  360
EAKTERAQTE DEIRNLEAKL EELKEVSMRY DADIEVLRSK AENYELMFQR EVNAPW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	190	KKKKRQKSLPLTVVQKKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027078446.1	0.0	B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A068U4F2	0.0	A0A068U4F2_COFCA; Uncharacterized protein
STRING	Solyc02g090710.2.1	1e-175	(Solanum lycopersicum)