PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4230_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 561aa    MW: 64030.6 Da    PI: 8.0894
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4230_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.53.4e-20156246199
                                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                          f kvl++s+v++  ++ lp +f++ h   +++++ ++lede+g+++e+k+i +k++    l++GW++Fv+a++L
  cra_locus_4230_iso_5_len_2086_ver_3 156 FMKVLVRSHVGSCFWMGLPVPFCKLHL--PRNDTPVVLEDENGEKFEIKYIAEKTG----LSAGWRKFVSAHKL 223
                                          89*********************9884..234567***************777777....************** PP

                                          -TT-EEEEEE-SSSEE..EEEEE-S CS
                                   B3  75 kegDfvvFkldgrsefelvvkvfrk 99 
                                           egD++vF+l++ ++f  +v v+r+
  cra_locus_4230_iso_5_len_2086_ver_3 224 VEGDVLVFQLISPTTF--KVYVVRA 246
                                          **********986666..7777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-21151247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-24151247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-26154245No hitNo description
PROSITE profilePS5086314.198156247IPR003340B3 DNA binding domain
PfamPF023626.1E-18156245IPR003340B3 DNA binding domain
SMARTSM010193.7E-25156247IPR003340B3 DNA binding domain
PfamPF052664.9E-8434547IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MRLKIKQVQP SPSPDFQNQE NHLDLDVMKK EIEENDNDKG NGCGWLNPEE NNSNNKSPPP  60
PDLSPTTPSV PQTLGKRKRK PKELIDEISP IFIRRKKKKA SNSASDQGMP DPGRSKLSKQ  120
VKAADDGSAP PVPLKSPTVV RAEEVQSNLG NEYPSFMKVL VRSHVGSCFW MGLPVPFCKL  180
HLPRNDTPVV LEDENGEKFE IKYIAEKTGL SAGWRKFVSA HKLVEGDVLV FQLISPTTFK  240
VYVVRANDMN EVDGALSLLN LETLTKQGDA XLVNYLLRLK IYFHGQQVLY XLFDFICLLR  300
LLNYGVKXKI EGAMDLKNKK KKRQKSLPLT VVQKKKQKAD LSKSLVPHLG QLEEQSGGND  360
SDEVASEVLE CTKFLGEAGR FRDIKSFEDF HISVNGVCID SELPEHVRRK YYELCCSKEA  420
FLHERFLPGL HCKLAAGIIF EAVNTTDAIK ACKITTSREE FEKWEKSLRS FELLGMNVGF  480
LRERLRRLQT LVFDVEDARE TKRYWEAKTE RAQTEDEIRN LEAKLEELKE VSMRYDADIE  540
VLRSKAENYE LMFQREVNAP W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17696RKRKPKELIDEISPIFIRRKK
27798KRKPKELIDEISPIFIRRKKKK
39398RRKKKK
4318335KKKKRQKSLPLTVVQKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027154044.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A068U4F20.0A0A068U4F2_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000407860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328