PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_42582_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HSF

Protein Properties

Length: 192aa MW: 21443.8 Da PI: 8.6436

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_42582_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	46.6	9.2e-15	2	46	50	103
HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 50 faSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103 f+SFvRQLn+YgF+k+ ++ weF+++ Fkkg+k+ll++i+r+k++ cra_locus_42582_iso_1_len_575_ver_3 2 FSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEIHRRKTA 46 89**************99.........********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.7E-5	2	43	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.4E-11	2	43	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.3E-11	2	43	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	4.6E-13	2	43	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
XFSSFVRQLN TYGFRKIVPD RWEFANEFFK KGEKHLLCEI HRRKTAQPQV HHHHHHALGG 60 GGPNFFPYPN RVSISPPDSD DQLLPNWCDS PPPPPLLSNS SPCGGVGNIT TINYNNNSSS 120 CSSSVTSLSE DNERLRRSNN MLMSELAHMR KLYNDIIYFV QNHVKPVAPS NSFPSSLLLP 180 SSATTPPING SS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068333.1	2e-83	heat stress transcription factor B-4
Swissprot	Q9C635	2e-61	HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBL	A0A2N9EJN3	6e-83	A0A2N9EJN3_FAGSY; Uncharacterized protein
STRING	XP_004501560.1	2e-81	(Cicer arietinum)
STRING	XP_002510200.1	1e-81	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2721	24	50