PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4280_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 209aa MW: 23098.3 Da PI: 7.9525

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4280_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.6	1.6e-11	16	42	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C++f +t Ck+G+rCkF+H++ cra_locus_4280_iso_3_len_1734_ver_3 16 PGVPDCPYFVKTQRCKFGSRCKFNHPK 42 5789*********************96 PP
2	zf-CCCH	41.6	2.1e-13	65	89	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG CkyG++CkF+H++ cra_locus_4280_iso_3_len_1734_ver_3 65 EPPCAFYMKTGKCKYGATCKFHHPK 89 79*********************96 PP
3	zf-CCCH	39.9	7.2e-13	135	158	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ cra_locus_4280_iso_3_len_1734_ver_3 135 EVDCPFYLKTGSCKYGATCRYNHP 158 689********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.028	15	43	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.2E-6	15	42	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.5E-9	17	42	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.13E-6	20	46	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.4E-6	21	44	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.5E-6	62	89	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.929	62	90	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.06E-7	65	90	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.1E-11	65	89	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.3E-7	67	91	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.802	132	160	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.4E-6	132	159	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-10	135	158	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.67E-6	136	160	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.5E-5	138	157	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MQVPMIANGE FLPERPGVPD CPYFVKTQRC KFGSRCKFNH PKDETSPLGS MESVHVVMLP 60 DRPSEPPCAF YMKTGKCKYG ATCKFHHPKD LQIPVTAQEN NSAEEAGVAD NETANSFFSP 120 AVMHNSKGLP VRLGEVDCPF YLKTGSCKYG ATCRYNHPDR NTINPPAASP AQHLKFGVVS 180 PAASILQSFD SRLTQAPVRK DLSSLEWDY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269\|PubMed:11595801, ECO:0000269\|PubMed:12530963}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027064369.1	9e-92	zinc finger CCCH domain-containing protein 37-like isoform X2
Swissprot	Q941Q3	8e-69	C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBL	A0A2R6PQD6	6e-91	A0A2R6PQD6_ACTCH; Zinc finger CCCH domain-containing protein
STRING	VIT_19s0085g01180.t01	5e-86	(Vitis vinifera)
STRING	XP_009782011.1	5e-86	(Nicotiana sylvestris)