PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4280_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 212aa MW: 22575.4 Da PI: 8.3093

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4280_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36	1.2e-11	177	201	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ cra_locus_4280_iso_4_len_1274_ver_3 177 GEKDCAYYMLTRTCKFGDSCKFDHP 201 7889********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.516	175	203	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.1E-4	175	202	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.19E-5	176	202	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-9	177	201	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-4	181	200	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MAKNQLYGYS FRSSGGGGAA ANLSSAGRYS SRSLPESFKS SEPSMLGSAR YLASSDLLSS 60 SSSSPKLLFS HTDGYSVAVD RIPAVTVASP ATSHMASYVS WPGPPGVDVG VGLTSAAGDI 120 LHSGLKRPAS EALYHQNIMG ACNMIGPTEA WFSTNPLAKR PRFESASHLP IYPQRPGEKD 180 CAYYMLTRTC KFGDSCKFDH PIWVPEGGIP DW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028079961.1	3e-73	zinc finger CCCH domain-containing protein 37 isoform X1
Refseq	XP_028079962.1	2e-73	zinc finger CCCH domain-containing protein 37 isoform X2
TrEMBL	A0A1U8E370	6e-65	A0A1U8E370_CAPAN; zinc finger CCCH domain-containing protein 37 isoform X2
TrEMBL	A0A1U8E5J0	7e-65	A0A1U8E5J0_CAPAN; Zinc finger CCCH domain-containing protein 37
TrEMBL	A0A2G2ZX90	7e-65	A0A2G2ZX90_CAPAN; zinc finger CCCH domain-containing protein 37 isoform X1
STRING	XP_009601117.1	2e-59	(Nicotiana tomentosiformis)