PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4280_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 84aa    MW: 9490.88 Da    PI: 6.4899
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4280_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-123963226
                                        -S---SGGGGTS--TTTTT-SS-SS CS
                             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                        +++ C +++ t tCk+Gd+CkF H+
  cra_locus_4280_iso_6_len_565_ver_3 39 GEKDCAYYMLTRTCKFGDSCKFDHP 63
                                        7899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5163765IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-43764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-63764IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-103963IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-54362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MGACNMIGPT EAWFSTNPLA KRPRFESASH LPIYPQRPGE KDCAYYMLTR TCKFGDSCKF  60
DHPIWVPEGG IPDWKEVPMI ANGE
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079961.12e-47zinc finger CCCH domain-containing protein 37 isoform X1
RefseqXP_028079962.11e-47zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q34e-40C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2N9H9N51e-44A0A2N9H9N5_FAGSY; Uncharacterized protein
TrEMBLD7T0Z49e-45D7T0Z4_VITVI; Uncharacterized protein
STRINGVIT_19s0085g01180.t011e-45(Vitis vinifera)