PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4280_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 220aa    MW: 24103.5 Da    PI: 7.6904
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4280_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.7e-111642127
                                         --S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                         ++ + C++f +t  Ck+G+rCkF+H++
  cra_locus_4280_iso_7_len_2203_ver_3 16 PGVPDCPYFVKTQRCKFGSRCKFNHPK 42
                                         5789*********************96 PP
2zf-CCCH41.52.2e-136589327
                                         S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                                         +++C f+++tG CkyG++CkF+H++
  cra_locus_4280_iso_7_len_2203_ver_3 65 EPPCAFYMKTGKCKYGATCKFHHPK 89
                                         79*********************96 PP
3zf-CCCH39.87.7e-13135158326
                                          S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                          ++ C+f+++tG CkyG++C+++H+
  cra_locus_4280_iso_7_len_2203_ver_3 135 EVDCPFYLKTGSCKYGATCRYNHP 158
                                          689********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.0281543IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-61542IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-91742IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-62046IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-62144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9296290IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-66289IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-116589IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-76590IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-76791IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802132160IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6132159IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10135158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6136160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5138157IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MQVPMIANGE FLPERPGVPD CPYFVKTQRC KFGSRCKFNH PKDETSPLGS MESVHVVMLP  60
DRPSEPPCAF YMKTGKCKYG ATCKFHHPKD LQIPVTAQEN NSAEEAGVAD NETANSFFSP  120
AVMHNSKGLP VRLGEVDCPF YLKTGSCKYG ATCRYNHPDR NTINPPAASP AQHLKFGVVS  180
PAASILQSFD SRLTQAPLHF GLGTTIYPQR PGEIECDVGI
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019157323.16e-99PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X3
RefseqXP_027119770.16e-99zinc finger CCCH domain-containing protein 37-like isoform X2
RefseqXP_027172469.16e-99zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q31e-75C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2R6PQD61e-100A0A2R6PQD6_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_010260864.19e-96(Nelumbo nucifera)