PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_42945_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GRAS

Protein Properties

Length: 146aa MW: 16905 Da PI: 6.9465

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_42945_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	133.1	3.1e-41	2	146	178	323
GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251 fn+ +akr+++++leeL+++++E+++Vn+ ++l + +de+v +++rd+v+k++k+++P+v+v+ +a +n++ cra_locus_42945_iso_1_len_435_ver_3 2 FNA-IAKRWDAISLEELKIEKDEMVVVNCLYRLRNAPDETVVESNPRDAVIKFIKKINPHVFVHGVLNAGYNAP 74 899.7******************************************************************* PP GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 F +rf al+++s++fd +ea+lp+e++er + Er +lgr+++nv+acegaer+ r ++++W+ r ++aG cra_locus_42945_iso_1_len_435_ver_3 75 FFTTRFKGALHHFSSMFDIFEANLPPEDQERFMFERGVLGRDVMNVIACEGAERVDRPDSYKQWQVRNQRAG 146 *****************************************************************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	27.186	1	146	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-38	2	146	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
XFNAIAKRWD AISLEELKIE KDEMVVVNCL YRLRNAPDET VVESNPRDAV IKFIKKINPH 60 VFVHGVLNAG YNAPFFTTRF KGALHHFSSM FDIFEANLPP EDQERFMFER GVLGRDVMNV 120 IACEGAERVD RPDSYKQWQV RNQRAG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027077214.1	3e-74	scarecrow-like protein 14
Refseq	XP_027168303.1	3e-74	scarecrow-like protein 33
Swissprot	P0C883	1e-55	SCL33_ARATH; Scarecrow-like protein 33
TrEMBL	A0A068UPY0	2e-70	A0A068UPY0_COFCA; Uncharacterized protein
STRING	evm.model.supercontig_81.122	5e-65	(Carica papaya)
STRING	GLYMA13G41261.1	4e-65	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191