PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4298_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 135aa    MW: 16150.3 Da    PI: 10.3624
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4298_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.21.4e-1183131247
                                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
                      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                          +rW+t E+e l  av ++G+g+Wk+I        + Rt  ++k++w++ 
  cra_locus_4298_iso_3_len_1202_ver_3  83 KRWSTLEEETLRSAVDKYGSGSWKLILMANRevfEERTVVDLKDKWRNM 131
                                          69*************************99999**9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.20877135IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-1178133IPR009057Homeodomain-like
SuperFamilySSF466896.73E-1379133IPR009057Homeodomain-like
SMARTSM007171.2E-481134IPR001005SANT/Myb domain
CDDcd116602.26E-1483133No hitNo description
PfamPF002499.2E-983131IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MLSLFCKLKH XQNKKLNLHI FFWHANVYGH IYEFSSKWDE SLDDKPDIPP SGKRSRLPSP  60
EGLLVSPLKE SEANKFMKRR RPKRWSTLEE ETLRSAVDKY GSGSWKLILM ANREVFEERT  120
VVDLKDKWRN MTRWH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17683MKRRRPKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241815.13e-32PREDICTED: uncharacterized protein LOC103340169
TrEMBLA0A251NLT43e-30A0A251NLT4_PRUPE; Uncharacterized protein
TrEMBLM5W4N52e-30M5W4N5_PRUPE; Uncharacterized protein
STRINGXP_008241815.11e-31(Prunus mume)