PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_43041_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 152aa MW: 17580.5 Da PI: 8.5714

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_43041_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75	1.5e-23	61	151	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.. 72 ++Y ++A++ GFs+rk++s+ s + g ++kr+fvC++ g++ ++kk+t +++r r++ r+gC+ak+ ++ke cra_locus_43041_iso_1_len_453_ver_3 61 EYYANFARKNGFSIRKERSRLSPQLG-VYKRDFVCYRAGFSPPRKKQTGEHQRDRKSVRCGCDAKMYLSKEMvd 133 69******************8888.***************************************9985 PP FAR1 73 .dgkwevtkleleHnHel 89 +w v ++++ HnHel cra_locus_43041_iso_1_len_453_ver_3 134 gVLQWFVVQFSNVHNHEL 151 5568***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-21	61	151	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
XIWMRRQQCP CGDWKCLITY GEEGEDTEIP SAAIKDDSGL SGAMVSPYVG MVFKSDEYAF 60 EYYANFARKN GFSIRKERSR LSPQLGVYKR DFVCYRAGFS PPRKKQTGEH QRDRKSVRCG 120 CDAKMYLSKE MVDGVLQWFV VQFSNVHNHE LX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007026336.2	2e-83	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_007026338.2	2e-83	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_011095923.1	2e-83	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_017979350.1	1e-84	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2
Refseq	XP_021294112.1	2e-83	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	2e-59	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A061GHB1	7e-84	A0A061GHB1_THECC; Far1-related sequence 10 isoform 4
STRING	EOY28958	8e-83	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]