PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_43361_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB
Protein Properties Length: 94aa    MW: 10976.3 Da    PI: 8.8749
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_43361_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.34.1e-19145448
                                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                         W++eEdellvd+v++ G+g+W + +++ g++R++k+c++rw +yl
  cra_locus_43361_iso_1_len_281_ver_3  1 WSQEEDELLVDYVNKNGPGNWQSLPKRAGLNRCGKSCRLRWTNYL 45
                                         *******************************************97 PP
2Myb_DNA-binding53.45.8e-175194146
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                         rg++++eE+ +++ ++++ G++ W++Ia++++ gRt++++k++w++
  cra_locus_43361_iso_1_len_281_ver_3 51 RGPFSQEEEAIIISLHRESGNK-WSRIAACLP-GRTDNEIKNYWNT 94
                                         89********************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001676.02E-11145No hitNo description
SuperFamilySSF466891.03E-30192IPR009057Homeodomain-like
PfamPF002494.0E-17145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-24152IPR009057Homeodomain-like
SMARTSM007171.9E-10147IPR001005SANT/Myb domain
PROSITE profilePS5129425.6149IPR017930Myb domain
PROSITE profilePS5129418.6275094IPR017930Myb domain
SMARTSM007176.2E-105094IPR001005SANT/Myb domain
PfamPF002491.9E-155194IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-255394IPR009057Homeodomain-like
CDDcd001678.71E-115394No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
WSQEEDELLV DYVNKNGPGN WQSLPKRAGL NRCGKSCRLR WTNYLRPDIK RGPFSQEEEA  60
IIISLHRESG NKWSRIAACL PGRTDNEIKN YWNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-2619430122MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
UniProtTranscription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
UniProtINDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190833.12e-49PREDICTED: transcription factor MYB39-like
SwissprotQ9LDR88e-46MY102_ARATH; Transcription factor MYB102
SwissprotQ9M0J53e-46MYB41_ARATH; Transcription factor MYB41
TrEMBLA0A396HN757e-47A0A396HN75_MEDTR; Putative transcription factor MYB-HB-like family
STRINGAES958161e-47(Medicago truncatula)
STRINGTraes_2DL_5A0300CE0.11e-47(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]