PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4348_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 196aa MW: 22182.1 Da PI: 9.8001

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4348_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.2	6.2e-13	124	169	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k + a++L +AveYIk+Lq cra_locus_4348_iso_1_len_1271_ver_3 124 SIAERMRRTRISDRMKKLQELFPNM----DKQTNTADMLDLAVEYIKDLQ 169 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.405	118	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-16	121	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.38E-12	122	173	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.7E-15	123	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-13	124	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-10	124	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MYSPEAISRD ISSNLMYSTN NNSSSGFKHG FLDGGFLKGK EILGSGSDLF LNQHQPQHQQ 60 QQNGSLMRYR SAPSSYFASL THHLSLPKTA GEMAAVEKYL QFQQDSVVPC KIRAKRGCAT 120 HPRSIAERMR RTRISDRMKK LQELFPNMDK QTNTADMLDL AVEYIKDLQN QVQTLTETRA 180 KCKCSKPQQQ CQNSTT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027113677.1	1e-67	transcription factor bHLH130-like
Refseq	XP_027163636.1	4e-68	transcription factor bHLH130-like
Swissprot	Q66GR3	3e-50	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A068UHK5	2e-68	A0A068UHK5_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400065029	5e-64	(Solanum tuberosum)

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]