PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_43671_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 240aa MW: 26652.4 Da PI: 8.827

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_43671_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.5	2.7e-33	140	197	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +D y+WrKYGqK vkg+++prsYYrC+ +gCpvkk+vers++dpk+v++tYeg+H+he cra_locus_43671_iso_1_len_829_ver_3 140 NDCYRWRKYGQKLVKGNPNPRSYYRCSNSGCPVKKHVERSSHDPKIVITTYEGKHDHE 197 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.2E-35	125	199	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-29	131	199	IPR003657	WRKY domain
PROSITE profile	PS50811	35.542	134	199	IPR003657	WRKY domain
SMART	SM00774	2.0E-36	139	198	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	140	196	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
XKKQVERSYD GRLTDIKYIG KHEHPKPQNS PPISAFVPPQ EVPKLDMAVT AASEANGKPS 60 FPHQDISKAI VPSGAPKQSA LTSNEGEISR SQNSHDNDDD SPNTKKQKRE TANVDDNLVK 120 KTYCESRYVV QTMSEVDVIN DCYRWRKYGQ KLVKGNPNPR SYYRCSNSGC PVKKHVERSS 180 HDPKIVITTY EGKHDHEMPA SSSSSQTAVG SHIDRKTVST ESTSENKPVG MEMVVHIGAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-36	126	199	1	74	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027062250.1	4e-89	WRKY transcription factor 1-like isoform X1
Refseq	XP_027065033.1	3e-89	WRKY transcription factor 1-like isoform X1
Refseq	XP_027172696.1	4e-89	WRKY transcription factor 1-like isoform X1
TrEMBL	A0A068VGU7	2e-88	A0A068VGU7_COFCA; Uncharacterized protein
STRING	XP_009605529.1	7e-72	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4558	22	42