PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_43671_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 230aa MW: 25588.2 Da PI: 8.5815

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_43671_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.6	2.5e-33	130	187	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +D y+WrKYGqK vkg+++prsYYrC+ +gCpvkk+vers++dpk+v++tYeg+H+he cra_locus_43671_iso_2_len_799_ver_3 130 NDCYRWRKYGQKLVKGNPNPRSYYRCSNSGCPVKKHVERSSHDPKIVITTYEGKHDHE 187 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.7E-35	115	189	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-29	121	189	IPR003657	WRKY domain
PROSITE profile	PS50811	35.542	124	189	IPR003657	WRKY domain
SMART	SM00774	2.0E-36	129	188	IPR003657	WRKY domain
Pfam	PF03106	1.2E-25	130	186	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
XKKQVERSYD GRLTDIKYIG KHEHPKPQNS PPISAFVPPQ EVPKLDMAVT AASEDISKAI 60 VPSGAPKQSA LTSNEGEISR SQNSHDNDDD SPNTKKQKRE TANVDDNLVK KTYCESRYVV 120 QTMSEVDVIN DCYRWRKYGQ KLVKGNPNPR SYYRCSNSGC PVKKHVERSS HDPKIVITTY 180 EGKHDHEMPA SSSSSQTAVG SHIDRKTVST ESTSENKPVG MEMVVHIGAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-36	116	189	1	74	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065033.1	8e-86	WRKY transcription factor 1-like isoform X1
TrEMBL	A0A068VGU7	6e-85	A0A068VGU7_COFCA; Uncharacterized protein
STRING	XP_009605529.1	2e-68	(Nicotiana tomentosiformis)
STRING	Migut.M00027.1.p	1e-68	(Erythranthe guttata)