PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4371_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 393aa    MW: 43305.5 Da    PI: 4.689
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4371_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.75.2e-16250286135
                                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                          C++Cg+++  Tp +Rrgpdg++tLCnaCGl+++ kg+
  cra_locus_4371_iso_3_len_1826_ver_3 250 CHHCGVSEscTPAMRRGPDGPRTLCNACGLMWANKGT 286
                                          **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009798.2E-781116IPR010399Tify domain
PROSITE profilePS5132012.85981116IPR010399Tify domain
PfamPF062002.6E-1083115IPR010399Tify domain
PROSITE profilePS5101712.719177219IPR010402CCT domain
PfamPF062038.1E-15177218IPR010402CCT domain
PROSITE profilePS501148.537244292IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-10244297IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-14248291IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.19E-11248297No hitNo description
CDDcd002023.95E-15249296No hitNo description
PROSITE patternPS003440250277IPR000679Zinc finger, GATA-type
PfamPF003204.8E-14250286IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MASNPKARRP YDGDDDDHVV ATRIELDEDD DDDEDEDDDG GEYDDTGDDV MDDAEGVRLD  60
ASNNYPRYSH RSGPGAGLPV VAQRTSELTL SFEGEVYVFP AVTPEKVQAV LLLLGGRDVP  120
TAVPTIDVPF HPNSKVVLQS VSSYXYIYVF CNLSMPYLNQ IFXAMDDTPK RSNLSRRIAS  180
LVRFREKRKE RCFDKKIRYS VRKEVAQRMH RKNGQFASLK EGSGSSSWDS AKTGLQAEGT  240
CRQETVLRRC HHCGVSESCT PAMRRGPDGP RTLCNACGLM WANKGTLRDL SKGGKNMALN  300
PVEPGTPADI KPSLIEGENS SGHPDELGTP PSKALMAETY NHSAKPDNRN LCGSREDIPM  360
GIGRSSGDLD EQEPLVDFAN TSETEIEIPT SFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027149418.11e-138GATA transcription factor 19-like isoform X1
SwissprotQ8GXL71e-65GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A068TXE21e-138A0A068TXE2_COFCA; Uncharacterized protein
STRINGXP_006433794.11e-136(Citrus clementina)
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]