PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4371_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 379aa    MW: 41966.7 Da    PI: 5.1194
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4371_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.74.9e-16222258135
                                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                          C++Cg+++  Tp +Rrgpdg++tLCnaCGl+++ kg+
  cra_locus_4371_iso_4_len_1864_ver_3 222 CHHCGVSEscTPAMRRGPDGPRTLCNACGLMWANKGT 258
                                          **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.85981116IPR010399Tify domain
SMARTSM009798.2E-781116IPR010399Tify domain
PfamPF062002.5E-1083115IPR010399Tify domain
PfamPF062037.7E-15149190IPR010402CCT domain
PROSITE profilePS5101712.719149191IPR010402CCT domain
PROSITE profilePS501148.537216264IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-10216269IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-14220263IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.14E-11220269No hitNo description
CDDcd002024.70E-15221268No hitNo description
PfamPF003204.5E-14222258IPR000679Zinc finger, GATA-type
PROSITE patternPS003440222249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MASNPKARRP YDGDDDDHVV ATRIELDEDD DDDEDEDDDG GEYDDTGDDV MDDAEGVRLD  60
ASNNYPRYSH RSGPGAGLPV VAQRTSELTL SFEGEVYVFP AVTPEKVQAV LLLLGGRDVP  120
TAVPTIDVPF HPNSKVMDDT PKRSNLSRRI ASLVRFREKR KERCFDKKIR YSVRKEVAQR  180
MHRKNGQFAS LKEGSGSSSW DSAKTGLQAE GTCRQETVLR RCHHCGVSES CTPAMRRGPD  240
GPRTLCNACG LMWANKGTLR DLSKGGKNMA LNPVEPGTPA DIKPSLIEGE NSSGHPDELG  300
TPPSKALMAE TYNHSAKPDN RNLCGSREDI PMGIGRSSGD LDEQVVDAPY WFQKNVLHIF  360
FFPLITSKGV YLELENFHW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021832695.11e-133GATA transcription factor 24-like, partial
SwissprotQ8GXL75e-68GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A068TXE21e-132A0A068TXE2_COFCA; Uncharacterized protein
STRINGXP_008219237.11e-131(Prunus mume)
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]