PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4371_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 310aa    MW: 34200.6 Da    PI: 8.5718
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4371_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.13.7e-16167203135
                                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                          C++Cg+++  Tp +Rrgpdg++tLCnaCGl+++ kg+
  cra_locus_4371_iso_5_len_1397_ver_3 167 CHHCGVSEscTPAMRRGPDGPRTLCNACGLMWANKGT 203
                                          **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062035.8E-1594135IPR010402CCT domain
PROSITE profilePS5101712.71994136IPR010402CCT domain
SMARTSM004011.2E-10161214IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.537161209IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-14165208IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577168.55E-12165214No hitNo description
CDDcd002027.70E-15166213No hitNo description
PfamPF003203.4E-14167203IPR000679Zinc finger, GATA-type
PROSITE patternPS003440167194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
SVWLVMILGS AFLDNILGAK HVMDVPLSFK FVSFVNMHKR QCWCXVTIIN XVQAVLLLLG  60
GRDVPTAVPT IDVPFHPNSK VMDDTPKRSN LSRRIASLVR FREKRKERCF DKKIRYSVRK  120
EVAQRMHRKN GQFASLKEGS GSSSWDSAKT GLQAEGTCRQ ETVLRRCHHC GVSESCTPAM  180
RRGPDGPRTL CNACGLMWAN KGTLRDLSKG GKNMALNPVE PGTPADIKPS LIEGENSSGH  240
PDELGTPPSK ALMAETYNHS AKPDNRNLCG SREDIPMGIG RSSGDLDEQE PLVDFANTSE  300
TEIEIPTSFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433794.11e-124GATA transcription factor 24 isoform X1
RefseqXP_006472433.11e-124GATA transcription factor 24-like isoform X1
RefseqXP_024039692.11e-124GATA transcription factor 24 isoform X1
RefseqXP_024039693.11e-124GATA transcription factor 24 isoform X1
RefseqXP_024952243.11e-124GATA transcription factor 24-like isoform X1
SwissprotQ8GXL78e-56GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A067GNE41e-123A0A067GNE4_CITSI; Uncharacterized protein
TrEMBLA0A068TXE21e-123A0A068TXE2_COFCA; Uncharacterized protein
TrEMBLV4V5081e-123V4V508_9ROSI; Uncharacterized protein
STRINGXP_006433794.11e-124(Citrus clementina)
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]