PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4371_iso_9
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 253aa    MW: 28148.2 Da    PI: 5.1085
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4371_iso_9genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.61.9e-14222253130
                                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyy 30 
                                          C++Cg+++  Tp +Rrgpdg++tLCnaCGl++
  cra_locus_4371_iso_9_len_1729_ver_3 222 CHHCGVSEscTPAMRRGPDGPRTLCNACGLMW 253
                                          ******************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.85981116IPR010399Tify domain
SMARTSM009798.2E-781116IPR010399Tify domain
PfamPF062001.4E-1083115IPR010399Tify domain
PROSITE profilePS5101712.719149191IPR010402CCT domain
PfamPF062034.3E-15149190IPR010402CCT domain
SMARTSM004010.0037216253IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-11220253IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.05E-7220253No hitNo description
CDDcd002022.06E-11221253No hitNo description
PfamPF003203.6E-12222253IPR000679Zinc finger, GATA-type
PROSITE patternPS003440222249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MASNPKARRP YDGDDDDHVV ATRIELDEDD DDDEDEDDDG GEYDDTGDDV MDDAEGVRLD  60
ASNNYPRYSH RSGPGAGLPV VAQRTSELTL SFEGEVYVFP AVTPEKVQAV LLLLGGRDVP  120
TAVPTIDVPF HPNSKVMDDT PKRSNLSRRI ASLVRFREKR KERCFDKKIR YSVRKEVAQR  180
MHRKNGQFAS LKEGSGSSSW DSAKTGLQAE GTCRQETVLR RCHHCGVSES CTPAMRRGPD  240
GPRTLCNACG LMW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527369.11e-106GATA transcription factor 24 isoform X1
SwissprotQ8GXL74e-62GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2R6R3641e-105A0A2R6R364_ACTCH; GATA transcription factor
TrEMBLB9SN001e-105B9SN00_RICCO; GATA transcription factor, putative
STRINGXP_002527369.11e-105(Ricinus communis)
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]