PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_43896_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 215aa MW: 24089.5 Da PI: 9.1189

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_43896_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.4	1.1e-31	136	194	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s++prsYYrC++++C+vkk+v+r ++d+ +v++tYeg Hnh+ cra_locus_43896_iso_1_len_758_ver_3 136 LDDGYRWRKYGQKSVKNSKYPRSYYRCSQHTCNVKKQVQRLSKDTGIVVTTYEGIHNHP 194 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.7E-32	123	194	IPR003657	WRKY domain
SuperFamily	SSF118290	1.03E-27	129	195	IPR003657	WRKY domain
PROSITE profile	PS50811	28.495	131	196	IPR003657	WRKY domain
SMART	SM00774	1.6E-36	136	195	IPR003657	WRKY domain
Pfam	PF03106	4.6E-25	137	194	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MDDHQEAPPP PPPLPPPTTT TTPFLFTPHG HDHAFPSTSI HPPQLPPPSF LPSSVPELHD 60 IDLVGLLSAP PPVGQMPLSE TAAPPPPPLT VPEDEEMMSI INKEKRSSSS RGGKHRSKTR 120 NVPRVVFQTR SADDVLDDGY RWRKYGQKSV KNSKYPRSYY RCSQHTCNVK KQVQRLSKDT 180 GIVVTTYEGI HNHPCEKLME TLTPILKQIQ FLTRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-25	124	193	2	71	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022759566.1	2e-67	probable WRKY transcription factor 43 isoform X1
TrEMBL	A0A068UKL8	1e-64	A0A068UKL8_COFCA; Uncharacterized protein
TrEMBL	A0A1U8A2W7	5e-65	A0A1U8A2W7_NELNU; probable WRKY transcription factor 43
STRING	XP_010261390.1	8e-66	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6374	24	33