PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_442_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family Nin-like
Protein Properties Length: 178aa    MW: 20643.4 Da    PI: 8.4609
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_442_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK51.91.5e-16951446
                             RWP-RK  4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46
                                        i+ e l++y +++++d+A  L v+  +LKriCR+yGI+RWP 
  cra_locus_442_iso_4_len_808_ver_3  9 GITREILEQYSEMELEDVAEILHVSKATLKRICRKYGIDRWPP 51
                                       6999*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151912.707177IPR003035RWP-RK domain
PfamPF020421.1E-141053IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.108.3E-41648IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF542771.71E-1894177No hitNo description
SMARTSM006665.7E-1397178IPR000270PB1 domain
PROSITE profilePS5174515.54297178IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2404.1E-1998177No hitNo description
PfamPF005643.7E-1498177IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MRTRGVEYGI TREILEQYSE MELEDVAEIL HVSKATLKRI CRKYGIDRWP PKRWKGPNNT  60
VHRDSTPPIA AANENEKTDA QHHNMTSTRR REQDGGSIVV KATYGEDTLK FQLSFLAKKM  120
DLDKQVDKRL NDPSVKSFKI KYLDEDNEWV SIACDEDLKL CIDTFRLQGK TTIRLSIN