PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4434_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 496aa MW: 56225.7 Da PI: 6.278

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4434_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4e-06	89	111	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f++ G+C+ G+rC++ Hgp cra_locus_4434_iso_1_len_2081_ver_3 89 VPCYFYFN-GFCNKGERCSYLHGP 111 69****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.878	6	35	IPR000571	Zinc finger, CCCH-type
Pfam	PF15663	7.9E-12	6	63	No hit	No description
SMART	SM00356	0.006	7	34	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.239	37	63	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.63	39	62	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.1E-6	85	110	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.812	85	112	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0011	86	111	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.9E-6	90	113	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MDEEVQKRNT DCVYFLASPL TCKKGVDCEY RHSETARLNP RDCWYWMSGS CLNPTCAFRH 60 PPLDGRPETA SESTVANHQS AAPVNKTNVP CYFYFNGFCN KGERCSYLHG PDETAHTWKS 120 SKTVSAAVDG PSSDRKTSTC SDSVPAPVET QSFETVPKRA AGMKIKPEQK LQQPPPNKIA 180 ERHASSFEEF AAIRSSSPIL QEAVVHSRSQ ESAGLSSGDQ KLEPVEREEW LESSPGFDVL 240 VNDGSEDFEC EDDAVFIAPN PDAEEDEDYS QYLGYDYEDN IEVDRAYPDL RNSFERGVHD 300 KYHHVDDEDM NSVAKFSFRE EDGRLDHTLQ RKRTLCQEEL GSEGRSCGDL RDYLKKRRVI 360 DGQYPTYSQV RDRERPRPVS GGHLHGRLGS KVEVHSVGSR LEDKTRSNDI YKHARPRRSI 420 LSSSRNHNNN HFKQRRSAER EDLLPDVSRK IDSRKQKSAE ESALFTGPKS LAQIKEEKRK 480 ALANGGLPXW NEQVPK

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MDEEVQKRNT DCVYFLASPL TCKKGVDCEY RHSETARLNP RDCWYWMSGS CLNPTCAFRH  60
PPLDGRPETA SESTVANHQS AAPVNKTNVP CYFYFNGFCN KGERCSYLHG PDETAHTWKS  120
SKTVSAAVDG PSSDRKTSTC SDSVPAPVET QSFETVPKRA AGMKIKPEQK LQQPPPNKIA  180
ERHASSFEEF AAIRSSSPIL QEAVVHSRSQ ESAGLSSGDQ KLEPVEREEW LESSPGFDVL  240
VNDGSEDFEC EDDAVFIAPN PDAEEDEDYS QYLGYDYEDN IEVDRAYPDL RNSFERGVHD  300
KYHHVDDEDM NSVAKFSFRE EDGRLDHTLQ RKRTLCQEEL GSEGRSCGDL RDYLKKRRVI  360
DGQYPTYSQV RDRERPRPVS GGHLHGRLGS KVEVHSVGSR LEDKTRSNDI YKHARPRRSI  420
LSSSRNHNNN HFKQRRSAER EDLLPDVSRK IDSRKQKSAE ESALFTGPKS LAQIKEEKRK  480
ALANGGLPXW NEQVPK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065247.1	1e-167	zinc finger CCCH domain-containing protein 32-like
TrEMBL	A0A068UPB7	1e-165	A0A068UPB7_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11433	9	11