PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4485_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family CAMTA
Protein Properties Length: 809aa    MW: 90896.5 Da    PI: 6.2966
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4485_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1169.26.3e-53121272116
                                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLK 74 
                                          +ke + rwlk+ e+  iL+n+e h +t+e+++rp+ gsl+L+n++++r+fr+DG++w++k+dg++v E+he+LK
  cra_locus_4485_iso_1_len_3736_ver_3  12 VKEaQVRWLKPPEVFFILKNHEDHMITHEPPQRPTGGSLFLFNKRVLRFFRRDGHTWRRKRDGRAVGEAHERLK 85 
                                          667699******************************************************************** PP

                                 CG-1  75 vggvevlycyYahseenptfqrrcywlLeeelekivlvhyle 116
                                          vg+ve+++cyYah+e+np+fqrr+yw+L+ ++e+ivlvhy++
  cra_locus_4485_iso_1_len_3736_ver_3  86 VGNVEAINCYYAHGEQNPSFQRRSYWMLDPAYEHIVLVHYRD 127
                                          ****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.118134IPR005559CG-1 DNA-binding domain
SMARTSM010765.6E-7311129IPR005559CG-1 DNA-binding domain
PfamPF038593.1E-4614127IPR005559CG-1 DNA-binding domain
PfamPF018332.6E-9393469IPR002909IPT domain
SuperFamilySSF812967.0E-19393477IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.101.9E-9393474IPR013783Immunoglobulin-like fold
SMARTSM000159.4595617IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.821596624IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525406.11E-6643699IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000154.5651673IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.584652681IPR000048IQ motif, EF-hand binding site
PfamPF006120.016654672IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0014674696IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.736676700IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-5677696IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MSQSGYNFGD LVKEAQVRWL KPPEVFFILK NHEDHMITHE PPQRPTGGSL FLFNKRVLRF  60
FRRDGHTWRR KRDGRAVGEA HERLKVGNVE AINCYYAHGE QNPSFQRRSY WMLDPAYEHI  120
VLVHYRDINE GRNSAGIISQ FSPASLSSLS QSPSSYTTQQ PGSSALISES FEQYQNLSSP  180
ASVEISSDAV IKTKGVNYSD NVERVDEVNS SSGLEMSQAL RMIEHQLSLN DDCLKEIDPF  240
CSENENSDLE NIIHDPSSSA STPGYMMQNH HQLGYEVNDW KNMLDVYSED VVSQVRHADK  300
VNENGNLLKS SMKGPAAGQE SSSWLNFTGS NSQMSSVPVT KEVEDFQYPV YSSNTGTYVN  360
NQDHYTTLFD QGQIGISFED DVSLTISQKQ RFTIREISPN WGYASETTKV VIIGSFLCDP  420
LECTWTCMFG DVEVPVQIIQ DGVISCHAPP HLPGKVTLCV TSANRESCSE VREFDYRVKP  480
SVCSHCSQPD ADATRSPEEL LLLVRFVQLL LSAASVQKGD SSESGIDLLG KLKTGYLSEV  540
ALTSHLSSLT LEESELSKGS ADVEVERTLS SVPKTNPLTN EDQLSLKDTL AAVRNAAQAA  600
ARIQSAFRAH SFRKRLHRQA SSAGLDEYGL LSDDVQGLSA ASKLAFRNSR DYNSAALSIQ  660
KKYRGWKGRK DFLAFRQKVV KIQAHVRGYQ VRKHYKVCWA VGILEKVVLR WRRRGVGLRG  720
FRNENEPIDD SEDEDILRVF RKQKVDAAID EAVSRVLSMV ESPNARQQYR RLLEKYRQAK  780
AALQESESET ASASYGFSNM ENDDIYLLQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027151349.10.0calmodulin-binding transcription activator 4 isoform X3
SwissprotQ9FYG24e-93CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A068UXT90.0A0A068UXT9_COFCA; Uncharacterized protein
STRINGSolyc05g015650.2.10.0(Solanum lycopersicum)
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]