PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4485_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family CAMTA
Protein Properties Length: 989aa    MW: 110454 Da    PI: 6.734
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4485_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1168.88.5e-53461612116
                                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLK 74 
                                          +ke + rwlk+ e+  iL+n+e h +t+e+++rp+ gsl+L+n++++r+fr+DG++w++k+dg++v E+he+LK
  cra_locus_4485_iso_4_len_4393_ver_3  46 VKEaQVRWLKPPEVFFILKNHEDHMITHEPPQRPTGGSLFLFNKRVLRFFRRDGHTWRRKRDGRAVGEAHERLK 119
                                          667699******************************************************************** PP

                                 CG-1  75 vggvevlycyYahseenptfqrrcywlLeeelekivlvhyle 116
                                          vg+ve+++cyYah+e+np+fqrr+yw+L+ ++e+ivlvhy++
  cra_locus_4485_iso_4_len_4393_ver_3 120 VGNVEAINCYYAHGEQNPSFQRRSYWMLDPAYEHIVLVHYRD 161
                                          ****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.1142168IPR005559CG-1 DNA-binding domain
SMARTSM010765.6E-7345163IPR005559CG-1 DNA-binding domain
PfamPF038594.1E-4648161IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.4E-9427508IPR013783Immunoglobulin-like fold
PfamPF018333.3E-9427503IPR002909IPT domain
SuperFamilySSF812969.1E-19427511IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.201.5E-13624717IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.212625717IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-14629719IPR020683Ankyrin repeat-containing domain
CDDcd002047.46E-13646717No hitNo description
PfamPF127963.0E-7646718IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0032658690IPR002110Ankyrin repeat
PROSITE profilePS5008810.392658690IPR002110Ankyrin repeat
SMARTSM002482900697726IPR002110Ankyrin repeat
SMARTSM000159.4775797IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.821776804IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.82E-6823879IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000154.5831853IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.584832861IPR000048IQ motif, EF-hand binding site
PfamPF006120.021834852IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0014854876IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.736856880IPR000048IQ motif, EF-hand binding site
PfamPF006123.0E-5857876IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 989 aa     Download sequence    Send to blast
MQHGLSLISL SFMSASHLLR NACPYGRIFM KXPHCFISGY NFGDLVKEAQ VRWLKPPEVF  60
FILKNHEDHM ITHEPPQRPT GGSLFLFNKR VLRFFRRDGH TWRRKRDGRA VGEAHERLKV  120
GNVEAINCYY AHGEQNPSFQ RRSYWMLDPA YEHIVLVHYR DINEGRNSAG IISQFSPASL  180
SSLSQSPSSY TTQQPGSSAL ISESFEQYQN LSSPASVEIS SDAVIKTKGV NYSDNVERVD  240
EVNSSSGLEM SQALRMIEHQ LSLNDDCLKE IDPFCSENEN SDLENIIHDP SSSASTPGYM  300
MQNHHQLGYE VNDWKNMLDV YSEDVVSQVR HADKVNENGN LLKSSMKGPA AGQESSSWLN  360
FTGSNSQMSS VPVTKEVEDF QYPVYSSNTG TYVNNQDHYT TLFDQGQIGI SFEDDVSLTI  420
SQKQRFTIRE ISPNWGYASE TTKVVIIGSF LCDPLECTWT CMFGDVEVPV QIIQDGVISC  480
HAPPHLPGKV TLCVTSANRE SCSEVREFDY RVKPSVCSHC SQPDADATRS PEELLLLVRF  540
VQLLLSAASV QKGDSSESGI DLLGKLKTGE DSWGQVIEAL LVGSSTSSVT KDWLLQELLK  600
DKLQNWLSSR SEEISSHTSC YLSKKEQGII HMIAGLGLEW ALHPVLKSGV SVNFRDINGW  660
TALHWAARFG REKMVAALIA SGALAGAVTD PTPRDPIGKT AAFIAATYGH KGLAGYLSEV  720
ALTSHLSSLT LEESELSKGS ADVEVERTLS SVPKTNPLTN EDQLSLKDTL AAVRNAAQAA  780
ARIQSAFRAH SFRKRLHRQA SSAGLDEYGL LSDDVQGLSA ASKLAFRNSR DYNSAALSIQ  840
KKYRGWKGRK DFLAFRQKVV KIQAHVRGYQ VRKHYKVCWA VGILEKVVLR WRRRGVGLRG  900
FRNENEPIDD SEDEDILRVF RKQKVDAAID EAVSRVLSMV ESPNARQQYR RLLEKYRQAK  960
AALQESESET ASASYGFSNM ENDDIYLLQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027097389.10.0calmodulin-binding transcription activator 4-like isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A068UXT90.0A0A068UXT9_COFCA; Uncharacterized protein
STRINGXP_009617256.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39322037
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]