PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4547_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARF
Protein Properties Length: 784aa    MW: 87078.7 Da    PI: 6.7671
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4547_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.2e-18371032999
                                          -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                   B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                          ++   ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+++++r+
  cra_locus_4547_iso_3_len_3892_ver_3  37 PP--AQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLGIRRA 103
                                          33..34899**********************************************..8899999****997 PP
2Auxin_resp119.42.8e-39128211183
                           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvr 73 
                                          aahaa+t+s F+++YnPras++eFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sd+dpvr
  cra_locus_4547_iso_3_len_3892_ver_3 128 AAHAAATNSRFTIFYNPRASSTEFVIPLAKYVKAVChTRVSVGMRFRMLFETEESSVRRYMGTITGISDMDPVR 201
                                          79********************************97689*********************************** PP

                           Auxin_resp  74 WpnSkWrsLk 83 
                                          WpnS+Wrs+k
  cra_locus_4547_iso_3_len_3892_ver_3 202 WPNSHWRSVK 211
                                          *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010198.7E-918104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-2728117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-2730131IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-1533103IPR003340B3 DNA binding domain
CDDcd100172.23E-1240102No hitNo description
PROSITE profilePS5086310.60241104IPR003340B3 DNA binding domain
PfamPF065074.5E-34128211IPR010525Auxin response factor
PfamPF023092.6E-7639739IPR033389AUX/IAA domain
SuperFamilySSF542773.53E-7644725No hitNo description
PROSITE profilePS5174523.928650734IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
XWXMSLTVIE LPLALRVFCP TPFHTLXFYL QDFSQQPPAQ ELIARDLHDN EWKFRHIFRG  60
QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM PSSVLSSDSM  120
HLGLLAAAAH AAATNSRFTI FYNPRASSTE FVIPLAKYVK AVCHTRVSVG MRFRMLFETE  180
ESSVRRYMGT ITGISDMDPV RWPNSHWRSV KVGWDESTAG ERQPRVSLWE IEPLTTFPMY  240
TSPFPLRLKR PWPPGLPSFN GMKEEDMGMN SPLMWLRGDV GERALHCLNF QGVGVAPWMQ  300
PRFDATMLGM QNDLYQAMAA AAALQEMTPA TVDPSKQALS SLLQLQQSQS VVSRPAASMQ  360
NQMLQESQSQ PTFILSIPES QSHLQVQPQP QPLLIQQQLQ HQTSFNNLQQ QPQHHQPSAL  420
QHQQLNDHHQ VSGVMPVLSQ LTTSSQSQVQ SPSLQSLSSM QQQSFADSNG NPSTNSIMSP  480
LHSLLSSVPP DGTSHLLNVP RSGTLLSPTG WPPKRVAVDP VLSSIGSQCI SPQLGPSNTN  540
ISPNSVSLPP FPGRECSIDQ EGSGDPQNNL LFGVNIDSSS LLIQNEMSNL RGVVSESDST  600
SVPFGSSNYV STTNTDFPSN NPTMTPSSCI SESGFPKSSE NVGQANLHIR TFVKVHKSGS  660
FGRSLDITKF SSYHELRSEL ARMFGLEGHL EDPLRSGWQL VFVDRENDVL LLGDDPWPEF  720
VNSVWCIKIL SPQEVQHMGK RGLELLNSVP VSPLPNSTSC DDFTSRQESR NPSSMITSIC  780
SFDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-8932232188388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087006.10.0auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A068UB170.0A0A068UB17_COFCA; Auxin response factor
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]