PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4547_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARF
Protein Properties Length: 909aa    MW: 100331 Da    PI: 6.6261
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4547_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.7e-24127228199
                                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHH CS
                                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWke 67 
                                          f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ 
  cra_locus_4547_iso_6_len_5257_ver_3 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSV 198
                                          99*****************************8544444..48******************************** PP

                                          HHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                   B3  68 FvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                          Fv+a++L +gD+v+F   ++++ +l+++++r+
  cra_locus_4547_iso_6_len_5257_ver_3 199 FVSAKRLVAGDSVLFI--WNEKNQLLLGIRRA 228
                                          ****************..8899999****997 PP
2Auxin_resp119.13.4e-39253336183
                           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvr 73 
                                          aahaa+t+s F+++YnPras++eFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sd+dpvr
  cra_locus_4547_iso_6_len_5257_ver_3 253 AAHAAATNSRFTIFYNPRASSTEFVIPLAKYVKAVChTRVSVGMRFRMLFETEESSVRRYMGTITGISDMDPVR 326
                                          79********************************97689*********************************** PP

                           Auxin_resp  74 WpnSkWrsLk 83 
                                          WpnS+Wrs+k
  cra_locus_4547_iso_6_len_5257_ver_3 327 WPNSHWRSVK 336
                                          *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.41E-49111256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-42119242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-21126227No hitNo description
PfamPF023623.6E-22127228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548127229IPR003340B3 DNA binding domain
SMARTSM010192.0E-24127229IPR003340B3 DNA binding domain
PfamPF065075.5E-34253336IPR010525Auxin response factor
PfamPF023093.2E-7764864IPR033389AUX/IAA domain
SuperFamilySSF542774.32E-7769850No hitNo description
PROSITE profilePS5174523.928775859IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MRLSSPGFSL QSPEGEKRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDHIPNVSSL PPQLICQLHN VTMHADVETD EVYAQMTLQP MSPQEQKEAS FLPADLGSPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASSTEFVIPL AKYVKAVCHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DMDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYTSPFP LRLKRPWPPG LPSFNGMKEE DMGMNSPLMW LRGDVGERAL HCLNFQGVGV  420
APWMQPRFDA TMLGMQNDLY QAMAAAAALQ EMTPATVDPS KQALSSLLQL QQSQSVVSRP  480
AASMQNQMLQ ESQSQPTFIL SIPESQSHLQ VQPQPQPLLI QQQLQHQTSF NNLQQQPQHH  540
QPSALQHQQL NDHHQVSGVM PVLSQLTTSS QSQVQSPSLQ SLSSMQQQSF ADSNGNPSTN  600
SIMSPLHSLL SSVPPDGTSH LLNVPRSGTL LSPTGWPPKR VAVDPVLSSI GSQCISPQLG  660
PSNTNISPNS VSLPPFPGRE CSIDQEGSGD PQNNLLFGVN IDSSSLLIQN EMSNLRGVVS  720
ESDSTSVPFG SSNYVSTTNT DFPSNNPTMT PSSCISESGF PKSSENVGQA NLHIRTFVKV  780
HKSGSFGRSL DITKFSSYHE LRSELARMFG LEGHLEDPLR SGWQLVFVDR ENDVLLLGDD  840
PWPEFVNSVW CIKILSPQEV QHMGKRGLEL LNSVPVSPLP NSTSCDDFTS RQESRNPSSM  900
ITSICSFDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1571635747388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087006.10.0auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A068UB170.0A0A068UB17_COFCA; Auxin response factor
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]