PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4548_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 50aa    MW: 5818.7 Da    PI: 10.8711
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4548_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-081743329
                                        HHHHHHHHHHHHHHHHHHHHHHCTSCC CS
                                 HLH  3 rahnerErrRRdriNsafeeLrellPk 29
                                        r +  rE++RRd++N +f+eL ++l k
  cra_locus_4548_iso_4_len_301_ver_3 17 RLKADREKKRRDKLNGSFQELGDILGK 43
                                        55789*****************99966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.06E-51544IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-61743IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-52143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 50 aa     Download sequence    Send to blast
RSQDAVEKKK DETIAKRLKA DREKKRRDKL NGSFQELGDI LGKMLHPSPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1726KKKDETIAKRLKADREKKRR
22328KKRRDK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC7SBB62e-17C7SBB6_CATRO; BHLH transcription factor MYC3