PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4624_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family M-type_MADS
Protein Properties Length: 328aa    MW: 35313.2 Da    PI: 9.8
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4624_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.75.5e-221966249
                                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                         +i+nksnrqvtfskRr+g++KKA+EL  L +aeva i+fs+ gk++ y
  cra_locus_4624_iso_4_len_1211_ver_3 19 KIKNKSNRQVTFSKRRAGLFKKANELVALSGAEVAFIVFSPGGKVFSY 66
                                         59*******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.4691070IPR002100Transcription factor, MADS-box
SMARTSM004329.5E-311069IPR002100Transcription factor, MADS-box
CDDcd002651.92E-361180No hitNo description
SuperFamilySSF554552.75E-271185IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-191232IPR002100Transcription factor, MADS-box
PfamPF003197.9E-241966IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-193247IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-194768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
VMARIGKKTR GRQKIEMVKI KNKSNRQVTF SKRRAGLFKK ANELVALSGA EVAFIVFSPG  60
GKVFSYGHPD VETIIKRYLN RNSPNSVDQT DVERLVETHX XXXXXXXXXX XXXXXXXDLQ  120
KQVKQRKSEV QSTILNPYNL DFGFLGGGLA PYAEVNLNKV PFPMPEAPDA VFTNMLSHGS  180
VPNSSSSSGF EYAANFLRHN LMTSAAPAAG LSMFPGFDIT SMFPRSTGAS SSTNILPSNL  240
ATSETGTGSG SSSSMSHGLE ITPLVHPAGL MSYQVGASST YGGFDFTHVL SRNLRVPSFA  300
SLGFDQDGYN NENATAGTSS EAANNIGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1c7u_A2e-161185175MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1c7u_B2e-161185175MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM