PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_466_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YB

Protein Properties

Length: 204aa MW: 21274.6 Da PI: 7.195

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_466_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	183.5	1.7e-57	21	116	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGf 76 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGf cra_locus_466_iso_1_len_1536_ver_3 21 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGF 95 89*********************************************************************** PP NF-YB 77 edyveplkvylkkyrelegek 97 e+yveplk+yl+++r++egek cra_locus_466_iso_1_len_1536_ver_3 96 EEYVEPLKIYLQRFRDMEGEK 116 *****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.6E-54	16	123	IPR009072	Histone-fold
SuperFamily	SSF47113	2.7E-40	23	125	IPR009072	Histone-fold
Pfam	PF00808	6.1E-28	26	90	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.1E-20	54	72	No hit	No description
PROSITE pattern	PS00685	0	57	73	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.1E-20	73	91	No hit	No description
PRINTS	PR00615	1.1E-20	92	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MADSDNESGG GGQRGSECSP REQDRFLPIA NVSRIMKKAL PANAKISKDA KETVQECVSE 60 FISFITGEAS DKCQREKRKT INGDDLLWAM TTLGFEEYVE PLKIYLQRFR DMEGEKSAMA 120 GGSSGGGGNG SVSGGGYHHH PGETGGGGMY GGPTAGLMMG TPHQGHHHVY GSGVYTQMPS 180 GAGAQGKVGS GYLGSGSSAP GRPR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-48	15	111	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003634760.1	1e-88	PREDICTED: nuclear transcription factor Y subunit B-3
Swissprot	O23310	3e-71	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A438ERG5	6e-86	A0A438ERG5_VITVI; Nuclear transcription factor Y subunit B-3
TrEMBL	D7UAG5	3e-87	D7UAG5_VITVI; Uncharacterized protein
STRING	VIT_19s0015g00440.t01	6e-88	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]