PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4692_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARF
Protein Properties Length: 1113aa    MW: 122598 Da    PI: 6.6381
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4692_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62.1e-22134235199
                                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHH CS
                                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWke 67 
                                          f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++ ++W++++iyr++++r++lt+GW+ 
  cra_locus_4692_iso_6_len_4538_ver_3 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSL 205
                                          99*****************************96555444..8******************************** PP

                                          HHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                   B3  68 FvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                          Fv+ ++L +gD+v+F   ++++++l+++++r+
  cra_locus_4692_iso_6_len_4538_ver_3 206 FVSGKRLFAGDSVLFI--RDEKQQLLLGIRRA 235
                                          ****************..5688889****997 PP
2Auxin_resp119.13.5e-39260343183
                           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvr 73 
                                          aahaa+++s+F+v+YnPras+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvr
  cra_locus_4692_iso_6_len_4538_ver_3 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVR 333
                                          79******************************998669************************************ PP

                           Auxin_resp  74 WpnSkWrsLk 83 
                                          W+nS+Wr+L+
  cra_locus_4692_iso_6_len_4538_ver_3 334 WKNSQWRNLQ 343
                                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-43124263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-41125249IPR015300DNA-binding pseudobarrel domain
CDDcd100177.17E-19133225No hitNo description
PfamPF023622.0E-20134235IPR003340B3 DNA binding domain
SMARTSM010197.2E-23134236IPR003340B3 DNA binding domain
PROSITE profilePS5086311.942134236IPR003340B3 DNA binding domain
PfamPF065071.6E-34260343IPR010525Auxin response factor
PROSITE profilePS5174527.82110011085IPR000270PB1 domain
PfamPF023095.6E-710011086IPR033389AUX/IAA domain
SuperFamilySSF542771.28E-610141079No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1113 aa     Download sequence    Send to blast
MKTSANGAGA PLATASGNPT EGEKKSINPE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLQPVP SFDKDALLRS  120
DLTMKANKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFTMQPP AQELVARDLH  180
DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVCSNQIS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERRNRVSI  360
WEIEPVTAPF FICPTPFFRP KRPRQPGMPD DDSSDLDSIF KRTMPWLGDD FGMKDPQGLP  420
GLSLVQWMNM QQSSSLANSM QPNYLQSFSG SVLQNLAGAD LSRQLGGLPG QVPQHNNLQF  480
NGQRPGQQPQ HLEQLQKLPA ASLNPLGSII QPQQQLTDLA QQQRQNLMNQ TLPTSQVQAQ  540
LLQANLVQSQ NVLQQQQASH QLQRNLSQNL QSPQSQPQQQ NFESESTTKP NGSQSNDPIS  600
QQFNMPENQI QLQLLQKLHQ QQQSFLAQQS ALQQPPQLTP IHDQQKPLLD VPQSFSRSMT  660
SSQILDASQT ISTSLPQSHV SPQQMTRTGS QNNLRFNQPP LQGKPHQQQQ QPGVLPELHG  720
HVGHTLTPTN QLSAAGSSLI TGAAGGGHSA ITDDIPSCST SPSTNNCPNV VQPIMNGRTH  780
RSAPMGDEIT QPSATLLSSS GLETVSASSN LVKDMMQKPE VKPSLNVSKS QNQGFFAHQT  840
FLNTSGAQID YLDSSSSATS VCLSQNDVHL QQNTNQMSFN SQPVLFRDTS QEDVHADPRT  900
NISFGANMDN QLGMPMMSDP VITKGMMGSG KDFSNNLASE GGMLSSFENP KESQPELSSS  960
MVSGSFGVPD MAFNSIDSAI NDNGFMNRNA WAPPPQLPRM RTYTKVYKRG AVGRSIDITR  1020
YSGYEELKQD LARRFGIEGQ LEDRQRIGWK LVYVDHENDV LLVGDDPWEE FVNCVRCIKI  1080
LSPQEVQQMS LDGDFGNSVL PNQACSSSDG GNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1712336447388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068123.10.0auxin response factor 19-like isoform X1
TrEMBLA0A068UXX80.0A0A068UXX8_COFCA; Auxin response factor
STRINGXP_009762809.10.0(Nicotiana sylvestris)