PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_46963_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family YABBY
Protein Properties Length: 72aa    MW: 7963.98 Da    PI: 7.4691
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_46963_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY913e-28368569
                                YABBY  5 ssseqvCyvqCnfCntilavsvPst.slfkvvtvrCGhCtsllsvnlakasqllaaeshldeslke 69
                                          +se+vCyv+CnfCntilavsvP + s++ +vtvrCGhC++llsvn+    + l+ ++hl+++  e
  cra_locus_46963_iso_1_len_326_ver_3  3 ITSERVCYVHCNFCNTILAVSVPCSsSMLAIVTVRCGHCSNLLSVNVGALLHHLPLQHHLQQKQDE 68
                                         589********************7526899******************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.8E-27468IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MDITSERVCY VHCNFCNTIL AVSVPCSSSM LAIVTVRCGH CSNLLSVNVG ALLHHLPLQH  60
HLQQKQDESN KX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027082540.16e-31putative axial regulator YABBY 2 isoform X2
RefseqXP_027164896.17e-31putative axial regulator YABBY 2 isoform X2
SwissprotQ10FZ71e-21YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A1P8NTF64e-27A0A1P8NTF6_VACCO; FAS-like protein
STRINGVIT_06s0009g00880.t013e-26(Vitis vinifera)