PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_476_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HB-other
Protein Properties Length: 333aa    MW: 36987 Da    PI: 6.317
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_476_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-0931681954
                                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                            Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
                                        Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  cra_locus_476_iso_2_len_1034_ver_3 31 FEHflHPYPKDSDKLMLAKQTGLTRSQVSNWFINARVR 68
                                        664459******************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.147972IPR001356Homeobox domain
SMARTSM003892.3E-91276IPR001356Homeobox domain
CDDcd000864.01E-121272No hitNo description
SuperFamilySSF466892.35E-171379IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-291579IPR009057Homeodomain-like
PfamPF059202.4E-182968IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
FVDNQLRQHN AWRPQRGLPE RSVSVLRAWL FEHFLHPYPK DSDKLMLAKQ TGLTRSQVSN  60
WFINARVRLW KPMVEEMYME EMKENEKNGL AEEKTSKSEQ NEDSASRSTA PLDKTSTLEN  120
QNNNITTPIS MSPPTTASPT GIQQQIQNHS GGFNLIGSPE LDNITQGSPK KPRSTDNNML  180
HSPTSVPSIN NMDAKTNDSN NEQLTINFGS ERQSREGFSL LGAPTNFIGG FGTYPIGELG  240
RFSAEQFPAS YAGNGVSLTL GLPHCENLSI SGTHQTFLPN QNMQLGRGVE IGDTNEYGSI  300
NTPTSTHSTS VYENLNIQNR KRFAAQLLPD FVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-161876563Homeobox protein Meis2
3k2a_B4e-161876563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027176216.11e-177BEL1-like homeodomain protein 1
RefseqXP_027176217.11e-177BEL1-like homeodomain protein 1
RefseqXP_027176218.11e-177BEL1-like homeodomain protein 1
RefseqXP_027176219.11e-177BEL1-like homeodomain protein 1
RefseqXP_027176220.11e-177BEL1-like homeodomain protein 1
SwissprotQ9SJ564e-77BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A068UQ861e-156A0A068UQ86_COFCA; Uncharacterized protein
STRINGPOPTR_0006s21950.11e-157(Populus trichocarpa)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]