PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_47931_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 141aa MW: 16744.3 Da PI: 9.5171

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_47931_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96	2.9e-30	5	58	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r+rWt+eLH++F+e v+ LGG++kAtPk il+lmk +gLt+ h+kSHLQkYR+ cra_locus_47931_iso_2_len_596_ver_3 5 KRMRWTQELHNQFLESVRLLGGPKKATPKGILKLMKCEGLTIFHIKSHLQKYRV 58 7****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.898	1	61	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-27	2	59	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-17	3	59	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-24	5	59	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-8	6	57	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-15	88	130	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MEKRKRMRWT QELHNQFLES VRLLGGPKKA TPKGILKLMK CEGLTIFHIK SHLQKYRVTQ 60 YVPESKQEDN TENTQRSSIT ELDQEMSMQI VEALKMQIDV QKRLYEQLQC QKNLQSRIEE 120 QAQQLKKMFD CRVETNTENA S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-25	4	61	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-25	4	61	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-25	4	61	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-25	4	61	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022896540.1	4e-51	myb family transcription factor PHL5-like
Swissprot	Q9SJW0	9e-44	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A1U8ASR3	6e-48	A0A1U8ASR3_NELNU; myb family transcription factor PHL5-like
STRING	XP_010265860.1	1e-48	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16717	4	5