PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_48576_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YB
Protein Properties Length: 106aa    MW: 12262.4 Da    PI: 5.1694
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_48576_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB54.33.2e-172415897
                                NF-YB 58 krktingddllwalatlGfedyveplkvylkkyrelegek 97
                                         +rkt+ngdd++wal+tlGf+dy  plk yl++yre+egek
  cra_locus_48576_iso_1_len_348_ver_3  2 RRKTVNGDDICWALGTLGFDDYSLPLKRYLNRYREIEGEK 41
                                         79***********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.1E-15261IPR009072Histone-fold
SuperFamilySSF471132.45E-11267IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
XRRKTVNGDD ICWALGTLGF DDYSLPLKRY LNRYREIEGE KLANNNQDRV ISEETEPTNQ  60
AEASTSGRFE AIDLQEIFRA SPTDIANLSS VLKWHLLQYH VKFWPA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259679.15e-22PREDICTED: nuclear transcription factor Y subunit B-5-like
TrEMBLA0A1U8A0J51e-20A0A1U8A0J5_NELNU; nuclear transcription factor Y subunit B-5-like
STRINGXP_010259679.12e-21(Nelumbo nucifera)