PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4883_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 22455.5 Da    PI: 9.7267
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4883_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.32.4e-29151151
                                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                        krien++nrqvt+skRrng++KKA+EL vLCda+v++i++sst+kl+ey+s
  cra_locus_4883_iso_2_len_951_ver_3  1 KRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMVSSTQKLHEYIS 51
                                        79***********************************************86 PP
2K-box15.95.3e-076393131
                               K-box  1 yqkssgksleeakaeslqqelakLkkeienL 31
                                        yqk+ g++l+++++e++q +l+kLk+ ++nL
  cra_locus_4883_iso_2_len_951_ver_3 63 YQKALGVDLWNSHYEKMQDQLKKLKDVNRNL 93
                                        7899999***********************9 PP
3K-box356.1e-13921375398
                               K-box  53 qLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                                         +L +++++sl+ iR++K +++ +qie+ +kk ++++e++++L  +l
  cra_locus_4883_iso_2_len_951_ver_3  92 NLIEDVDNSLSAIRERKFKVIGNQIETHKKKVRNVEEIHRNLLLEL 137
                                         78899************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.76E-32187IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-28152IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.604153IPR002100Transcription factor, MADS-box
CDDcd002652.11E-34172No hitNo description
PfamPF003192.3E-24249IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-131530IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-133051IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.38146143IPR002487Transcription factor, K-box
PfamPF014861.0E-692136IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
KRIENQTNRQ VTYSKRRNGL FKKANELTVL CDAKVSIIMV SSTQKLHEYI SPTTSTKQLI  60
DQYQKALGVD LWNSHYEKMQ DQLKKLKDVN RNLIEDVDNS LSAIRERKFK VIGNQIETHK  120
KKVRNVEEIH RNLLLELDAR QEDPHYGLVD NGGDYNSVLG FPNGAPPRLL ALRLQPNQPN  180
LHSGGGSDLT TFHLLE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027149663.11e-115floral homeotic protein DEFICIENS
SwissprotP237061e-112DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLG3EIS31e-114G3EIS3_9GENT; MADS box transcription factor (Fragment)
STRINGXP_009794650.11e-108(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]