PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4916_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HB-other
Protein Properties Length: 139aa    MW: 16487.5 Da    PI: 9.8591
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4916_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14e-20563357
                                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                        k  ++t+eq+e+Le++++++++ps  +r++L k++    +++ +q+kvWFqNrR +ek+
  cra_locus_4916_iso_2_len_573_ver_3  5 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIKECpilsNIEPKQIKVWFQNRRCREKQ 63
                                        6789*****************************************************97 PP
2bZIP_122.52.5e-0757991860
                                        HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                              bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60
                                        rr+R++ ++e  +L++   +L+a Nk L +e+++l+k+v+ l 
  cra_locus_4916_iso_2_len_573_ver_3 57 RRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLV 99
                                        9**************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.726164IPR001356Homeobox domain
SMARTSM003895.4E-16268IPR001356Homeobox domain
SuperFamilySSF466896.42E-18568IPR009057Homeodomain-like
CDDcd000861.98E-14565No hitNo description
PfamPF000461.1E-17563IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-20760IPR009057Homeodomain-like
CDDcd146860.001715796No hitNo description
Gene3DG3DSA:1.20.5.1708.2E-461110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDSSKYVRYT PEQVEALERV YAECPKPSSL RRQQLIKECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKEASRL QTVNRKLSAM NKLLMEENDR LQKQVSHLVY ENGYMRQQLH TVSXPELHEK  120
YYSGSLALVL LPGKHGDYX
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098570.15e-72homeobox-leucine zipper protein ATHB-14
SwissprotQ6AST12e-68HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A199VGN78e-71A0A199VGN7_ANACO; Homeobox-leucine zipper protein HOX33
TrEMBLA0A2P2K7Y34e-71A0A2P2K7Y3_RHIMU; Homeobox-leucine zipper protein ATHB-14-like isoform X1
TrEMBLA0A445GSX01e-70A0A445GSX0_GLYSO; Homeobox-leucine zipper protein ATHB-14 isoform C
TrEMBLA0A445IVY71e-70A0A445IVY7_GLYSO; Homeobox-leucine zipper protein ATHB-14 isoform B
TrEMBLW9RI951e-70W9RI95_9ROSA; Homeobox-leucine zipper protein HOX32
STRINGXP_010098570.12e-71(Morus notabilis)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]