PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5072_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27749.4 Da    PI: 8.7909
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5072_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.91e-313080151
                                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                        krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  cra_locus_5072_iso_1_len_782_ver_3 30 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 80
                                        79***********************************************96 PP
2K-box98.21.2e-32103193999
                               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                         l +++++s ++++ +Lk+++e Lq+ +R+llGedL +L+ keL++Le+qLe+slk++Rs+K++ +l+q+++lq+k
  cra_locus_5072_iso_1_len_782_ver_3 103 LPANESQSTYHDYVRLKARVEVLQQHHRNLLGEDLVNLNTKELEHLEHQLETSLKQVRSTKTKCMLDQLSDLQQK 177
                                         677899********************************************************************* PP

                               K-box  84 ekelqeenkaLrkkle 99 
                                         e++l e+nk Lr+kl+
  cra_locus_5072_iso_1_len_782_ver_3 178 EQMLAEDNKILRRKLD 193
                                         **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-402281IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.2772282IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-332398IPR002100Transcription factor, MADS-box
CDDcd002651.27E-432398No hitNo description
PRINTSPR004048.3E-332444IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002478IPR002100Transcription factor, MADS-box
PfamPF003192.2E-263178IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-334459IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-335980IPR002100Transcription factor, MADS-box
PfamPF014869.5E-27105192IPR002487Transcription factor, K-box
PROSITE profilePS5129714.842108198IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
XSQREKEVFC SWRKEKERVI KMGRGRVELK RIENKINRQV TFAKRRNGLL KKAYELSVLC  60
DAEVALIIFS NRGKLYEFCS GSSMTETLER YQRCTYGSID ADLPANESQS TYHDYVRLKA  120
RVEVLQQHHR NLLGEDLVNL NTKELEHLEH QLETSLKQVR STKTKCMLDQ LSDLQQKEQM  180
LAEDNKILRR KLDQSLADIH LRLTWEGGEQ VPQCDNRLPP HSQGFFQPLG LNSNLQMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-26961921101Developmental protein SEPALLATA 3
4ox0_B2e-26961921101Developmental protein SEPALLATA 3
4ox0_C2e-26961921101Developmental protein SEPALLATA 3
4ox0_D2e-26961921101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024972591.11e-112MADS-box protein EJ2-like isoform X2
SwissprotQ7Y0401e-104EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A0K2QQ271e-115A0A0K2QQ27_9GENT; MADS box protein
STRINGXP_009598871.11e-110(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]