PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_507_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 110aa    MW: 12633.3 Da    PI: 6.788
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_507_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-1958110355
                                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                         k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++
  cra_locus_507_iso_1_len_1028_ver_3  58 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARW 110
                                         56689***********************************************9 PP
2HD-ZIP_I/II89.15.4e-2957110154
                         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 
                                         ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+
  cra_locus_507_iso_1_len_1028_ver_3  57 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARW 110
                                         69***************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.59E-1841110IPR009057Homeodomain-like
PROSITE profilePS5007116.8653110IPR001356Homeobox domain
SMARTSM003895.1E-1156110IPR001356Homeobox domain
CDDcd000861.02E-1558110No hitNo description
PfamPF000462.2E-1658110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-1965110IPR009057Homeodomain-like
PRINTSPR000311.9E-68493IPR000047Helix-turn-helix motif
PRINTSPR000311.9E-693109IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MKRLGSSDSL GALMSICPTS ADEHNQGNSH VYPREFQSML EGLDEEGCVE ESGHIPEKKR  60
RLSVDQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074840.12e-74homeobox-leucine zipper protein ATHB-6
RefseqXP_027179939.11e-74homeobox-leucine zipper protein ATHB-6-like
SwissprotP466681e-42ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBLA0A068U0034e-73A0A068U003_COFCA; Uncharacterized protein
STRINGEOX920165e-65(Theobroma cacao)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]