PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5081_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 227aa MW: 26396.7 Da PI: 8.5893

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5081_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.4	1.1e-30	4	77	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+dk+++s +++ vg+kk Lvfy+g+ pkg k+dW+mheyr cra_locus_5081_iso_4_len_1634_ver_3 4 GENEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKSIYS-GSKYVGVKKALVFYQGKPPKGIKSDWIMHEYR 76 678************************************.999**************************9 PP NAM 128 l 128 l cra_locus_5081_iso_4_len_1634_ver_3 77 L 77 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.932	1	105	IPR003441	NAC domain
SuperFamily	SSF101941	1.29E-38	3	105	IPR003441	NAC domain
Pfam	PF02365	5.4E-14	8	77	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009825	Biological Process	multidimensional cell growth
GO:0009835	Biological Process	fruit ripening
GO:0009908	Biological Process	flower development
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
TEFGENEWYF FTPRDRKYPN GVRPNRAAVS GYWKATGTDK SIYSGSKYVG VKKALVFYQG 60 KPPKGIKSDW IMHEYRLIES RSQVPTKQNG SMRLDDWVLC RIYKKKNLGK LSMDIKVEDQ 120 SQETLVANEL VTSHDDEQQQ QTFKFPRPCS LSHLWEMDYM GSIPQIFGEN SIFDQQNMFM 180 LNNNNNNNGN VNTPRQLGDQ MGNQYSEAMV RFQGNQPVYV NPVFEFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	3	107	68	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	3	107	68	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	3	107	68	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	3	107	68	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-49	3	107	71	170	NAC domain-containing protein 19
3swm_B	2e-49	3	107	71	170	NAC domain-containing protein 19
3swm_C	2e-49	3	107	71	170	NAC domain-containing protein 19
3swm_D	2e-49	3	107	71	170	NAC domain-containing protein 19
3swp_A	2e-49	3	107	71	170	NAC domain-containing protein 19
3swp_B	2e-49	3	107	71	170	NAC domain-containing protein 19
3swp_C	2e-49	3	107	71	170	NAC domain-containing protein 19
3swp_D	2e-49	3	107	71	170	NAC domain-containing protein 19
4dul_A	2e-49	3	107	68	167	NAC domain-containing protein 19
4dul_B	2e-49	3	107	68	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00221	DAP	Transfer from AT1G69490	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027096674.1	1e-105	NAC domain-containing protein 2-like
Refseq	XP_027153866.1	1e-105	NAC domain-containing protein 2-like
Swissprot	K4BWV2	2e-90	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A068TVP6	1e-103	A0A068TVP6_COFCA; Uncharacterized protein
STRING	XP_009781251.1	5e-91	(Nicotiana sylvestris)

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]