PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5090_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HB-other

Protein Properties

Length: 207aa MW: 23270.6 Da PI: 8.81

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5090_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.2	7.8e-20	20	78	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ cra_locus_5090_iso_5_len_1274_ver_3 20 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 5679*****************************************************97 PP
2	bZIP_1	20.1	1.4e-06	72	117	18	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 rr+R++ ++e +L+ +L+a Nk L +e+++l+k+v++l e+ cra_locus_5090_iso_5_len_1274_ver_3 72 RRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYEN 117 9***************************************997665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-19	9	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.775	15	79	IPR001356	Homeobox domain
SMART	SM00389	1.3E-15	17	83	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-18	19	83	IPR009057	Homeodomain-like
CDD	cd00086	4.29E-16	20	80	No hit	No description
Pfam	PF00046	1.9E-17	21	78	IPR001356	Homeobox domain
CDD	cd14686	9.22E-6	72	111	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.0E-4	76	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010014	Biological Process	meristem initiation
GO:0010075	Biological Process	regulation of meristem growth
GO:0010087	Biological Process	phloem or xylem histogenesis
GO:0048263	Biological Process	determination of dorsal identity
GO:0080060	Biological Process	integument development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MAVTSTCKDA ASKMGMDNGK YVRYTPEQVE ALERLYHECP KPSSLRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVYENSYF 120 RQHTQNATLA TTDNSCESVV TSGQPHLTPQ HPPRDASPAG LLSIAEETLT EFLSKATGTA 180 VEWVQMPGMK PGPDSIGIIA ISHGCTG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269\|PubMed:11402194, ECO:0000269\|PubMed:15598805}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00200	DAP	Transfer from AT1G52150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165. {ECO:0000269\|PubMed:17237362, ECO:0000269\|PubMed:8575317}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081776.1	1e-139	homeobox-leucine zipper protein ATHB-15
Swissprot	Q39123	1e-125	ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBL	A0A068UKR5	1e-138	A0A068UKR5_COFCA; Uncharacterized protein
TrEMBL	A0A2I0IVT4	1e-138	A0A2I0IVT4_PUNGR; Uncharacterized protein
STRING	XP_010047286.1	1e-137	(Eucalyptus grandis)

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis. Planta, 2014. 239(5): p. 989-1001 [PMID:24488524] Baima S, et al. Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module. Mol Plant, 2014. 7(6): p. 1006-1025 [PMID:24777988] Kakehi J, et al. Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana. PLoS ONE, 2015. 10(1): p. e0117309 [PMID:25625317] Jia X, et al. Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] Liu S, et al. Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis. Front Plant Sci, 2015. 6: p. 388 [PMID:26082787] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918] Yamazaki K, et al. Suppression of DELLA signaling induces procambial cell formation in culture. Plant J., 2018. 94(1): p. 48-59 [PMID:29383774]