PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5093_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 108aa    MW: 12528.2 Da    PI: 9.0901
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5093_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.8e-312484259
                                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                                        dDgy+WrKYGqK++ g+++prsYYrCt++   +C+v+k+v+rs+edp+++eitY+g H+++
  cra_locus_5093_iso_1_len_321_ver_3 24 DDGYSWRKYGQKHILGAKYPRSYYRCTYRhiqNCWVTKQVQRSDEDPTIFEITYRGAHTCN 84
                                        8***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-301584IPR003657WRKY domain
SuperFamilySSF1182901.96E-272285IPR003657WRKY domain
SMARTSM007746.2E-402385IPR003657WRKY domain
PROSITE profilePS5081121.6432486IPR003657WRKY domain
PfamPF031062.1E-272484IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
XKTLPTWTEQ VKVSSDNGLE GPSDDGYSWR KYGQKHILGA KYPRSYYRCT YRHIQNCWVT  60
KQVQRSDEDP TIFEITYRGA HTCNLAANNN SVASPEKKEL HIYXXRSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-192483968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022844606.11e-52probable WRKY transcription factor 53
SwissprotQ8H0Y83e-44WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLA0A1S4C5W45e-50A0A1S4C5W4_TOBAC; probable WRKY transcription factor 53
STRINGXP_009613243.14e-50(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]