PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5093_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 54aa    MW: 6128.57 Da    PI: 9.3795
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5093_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY37.93.6e-122446224
                                        --SS-EEEEEEE--TT-SS-EEE CS
                                WRKY  2 dDgynWrKYGqKevkgsefprsY 24
                                        dDgy+WrKYGqK++ g+++pr Y
  cra_locus_5093_iso_3_len_303_ver_3 24 DDGYSWRKYGQKHILGAKYPRYY 46
                                        8********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-111346IPR003657WRKY domain
SuperFamilySSF1182904.97E-102246IPR003657WRKY domain
SMARTSM007740.00132354IPR003657WRKY domain
PROSITE profilePS5081110.6252454IPR003657WRKY domain
PfamPF031068.2E-92446IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 54 aa     Download sequence    Send to blast
XKTLPTWTEQ VKVSSDNGLE GPSDDGYSWR KYGQKHILGA KYPRYYIGSI SYPA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016496488.15e-20PREDICTED: probable WRKY transcription factor 53
SwissprotQ8H0Y89e-17WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLA0A1S4C5W41e-18A0A1S4C5W4_TOBAC; probable WRKY transcription factor 53
STRINGXP_009613243.13e-19(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]