PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5171_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 417aa    MW: 47953.1 Da    PI: 5.1382
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5171_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.11.1e-36641552102
                                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX CS
                         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk 75 
                                          Flkk+ye+++d+e++++isws++++sf+v+d+++f+k++Lpk+Fkh+nf+SFvRQLn+Y F+k+++++      
  cra_locus_5171_iso_3_len_1609_ver_3  64 FLKKTYEMVDDPETDSIISWSSTSTSFIVWDPHKFSKDLLPKHFKHNNFSSFVRQLNTYRFRKIDTDR------ 131
                                          9****************************************************************999...... PP

                                          TTSEEEEESXXXXXXXXXXXXXXXXXX CS
                         HSF_DNA-bind  76 ekiweFkhksFkkgkkellekikrkks 102
                                             weF+++ F+kgkk+ll++ikr+k+
  cra_locus_5171_iso_3_len_1609_ver_3 132 ---WEFANEAFQKGKKHLLKNIKRRKQ 155
                                          ...**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-3560153IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-3960153IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5760153IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.9E-3264153IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-186487IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-18102114IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340103127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-18115127IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MESLSSIKEE GGIEILSVKE EPMIFLDEDE VSREVNSNGG GFRDQFCDAP KPIEGLHEMG  60
PPPFLKKTYE MVDDPETDSI ISWSSTSTSF IVWDPHKFSK DLLPKHFKHN NFSSFVRQLN  120
TYRFRKIDTD RWEFANEAFQ KGKKHLLKNI KRRKQMMQQP SRYPGFDSTK YGTETELEKL  180
KNDQNTLKLE LLRIKQQQVY TENYLARIKE RLQSTESKQK CMAIFMAKAF KNPFFLPKFI  240
EKLKEKRALN SSGDQTSKKR RIVALENNPE KVTNGKKNLE DDQEEVTTVG SEIDTIFSQD  300
EGSPVEEKGI RTNVPDAENF ILWEKLMEDD LIYEEEEAET TRRNQSDIVM ELEDLIGKQQ  360
PEWGANMREL VEPVNCPGLM ANSSISLVIL GQGLPPPDCN AGKNAWRRDG QGHTGAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-256215327129Heat shock factor protein 1
5d5v_B6e-256215327129Heat shock factor protein 1
5d5v_D6e-256215327129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146152LKNIKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175782.11e-156heat shock factor protein HSF30-like isoform X1
RefseqXP_027175809.11e-156heat shock factor protein HSF30-like isoform X1
TrEMBLI3RJG01e-153I3RJG0_COFAR; HSFA9
STRINGXP_009606363.11e-127(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235