PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_52574_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 96aa MW: 10962.2 Da PI: 10.1503

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_52574_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27	1.1e-08	47	73	1	27
TSSS-HHHHHHHHHHHHHTTTT-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktI 27 +g+WT++Ed++l+++++ +G g+W+ cra_locus_52574_iso_1_len_782_ver_3 47 KGAWTKDEDLRLINYIRVHGEGCWRPL 73 79********************88654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.9E-11	38	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.019	42	94	IPR017930	Myb domain
SuperFamily	SSF46689	3.95E-7	42	77	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-6	47	72	IPR001005	SANT/Myb domain
CDD	cd00167	3.92E-4	49	71	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
XFQSNSNHPS SSSLPQPFLS PYRIGKIKSS KKLMGRSPCC EKAHTNKGAW TKDEDLRLIN 60 YIRVHGEGCW RPLPKAAXIA EMWKKLQIEM DKLLEA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012462415.1	2e-23	PREDICTED: transcription repressor MYB6-like
Refseq	XP_016738951.1	2e-23	PREDICTED: transcription repressor MYB6-like
Swissprot	P81395	3e-23	MYB30_ANTMA; Myb-related protein 330
STRING	Gorai.013G139200.1	9e-23	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15484	7	7

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]