PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5263_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 637aa    MW: 68926.1 Da    PI: 7.143
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5263_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.5e-09254274526
                                          --SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                          +C++f++ G C++Gd+C +aHg
  cra_locus_5263_iso_3_len_2094_ver_3 254 PCPDFRK-GSCQRGDTCEYAHG 274
                                          8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.87E-1548138IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.6E-1851157IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-853122IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.9853156IPR020683Ankyrin repeat-containing domain
SMARTSM002480.025383IPR002110Ankyrin repeat
CDDcd002042.63E-1655151No hitNo description
PROSITE profilePS5008812.9388123IPR002110Ankyrin repeat
SMARTSM002487.8E-588120IPR002110Ankyrin repeat
SMARTSM003563.8E-5249275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4253276IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-6254274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695254276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4282312IPR000571Zinc finger, CCCH-type
SMARTSM0035631284307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MEPLSPSCSD LLEFSASDDL SGFKVAVEEH GRSVDESGIW YGRKLGLKKM GFEERTPIMI  60
ASMFGSKRVL NYILEKGVVD VNRACGSDGA TALHCAVAGG SAASHEVVKL LLDASADVNL  120
VDANGRRPAD LIASVGNSCF NSRRKMLQLL LNGDSNHLEG SELNDQLMEQ AENQQVLTPV  180
ASREGTEKKE YPVDPSLPDI KNGIYGTDEF RMYTFKVKPC SRAYSHDWTE CPFVHPGENA  240
RRRDPRKYHY SCVPCPDFRK GSCQRGDTCE YAHGIFECWL HPAQYRTRLC KDETNCARRV  300
CFFAHKPEEL RPLYASTGSA VPSPRSLSSG ASAFDLASVS PLNLGSPSAM MPPTSTPPMT  360
PSGASSPIGG SIWANQSTLI PPTLQLPGSR LKSSINARDI DFDVDLSGLD HLRQQQFFDD  420
LNTISSPSSW SNGLGTSVDR NVEAIRHAGL TPTNLDDIFG NNIDSTILSQ LQGLKVDARS  480
SQLLSPNAIQ LRHNMNQQLR QSYSNSLSPS PVRTSSSSFG IDSSGSAAAV LSPRAAAFAK  540
RSQSFIDRGP VNRLSGISSP ISPAAAGGMH PSNLSDWSSP DGKLDWGIQK EEINKLRKSA  600
SFGFRNNGNN LGTAAGATSV PRTINEPDTT WVPSARP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021682553.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A067LPM40.0A0A067LPM4_JATCU; Uncharacterized protein
TrEMBLA0A1R3J6F00.0A0A1R3J6F0_9ROSI; Zinc finger, CCCH-type
STRINGPOPTR_0001s25960.10.0(Populus trichocarpa)