PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_52887_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 102aa    MW: 12047.5 Da    PI: 10.5327
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_52887_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.62.8e-20699290
                                 FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkek. 72
                                         fY++Y++ vGF+vr   +k+  +++    r++vCs+eg+ +e++      ++++++++  +r+ C a ++++ ++ 
  cra_locus_52887_iso_1_len_306_ver_3  6 FYEAYSRVVGFTVREXDKKRDLNTNVARYRKWVCSREGYCSERRPLnnsdRKHASKPKIISRIACPAGFRIRYDRk 81
                                         9********************999999***********999887655555677788999**************998 PP

                                 FAR1 73 dgkwevtkleleHnHela 90
                                         + k++v ++++eHnH+l+
  cra_locus_52887_iso_1_len_306_ver_3 82 SRKYVVGSFVKEHNHDLV 99
                                         9***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.3E-17699IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
EEAGFFYEAY SRVVGFTVRE XDKKRDLNTN VARYRKWVCS REGYCSERRP LNNSDRKHAS  60
KPKIISRIAC PAGFRIRYDR KSRKYVVGSF VKEHNHDLVS PK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027081720.18e-28protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_027081721.18e-28protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_027081722.18e-28protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_027081723.18e-28protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_027081724.18e-28protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_027183052.18e-28protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_027183053.18e-28protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_027183054.18e-28protein FAR1-RELATED SEQUENCE 5-like