PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_531_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 141aa MW: 15882.5 Da PI: 5.0133

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_531_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.2e-08	24	69	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+ E + + +a + + ++ +W ++a +++ g+t +++ ++ cra_locus_531_iso_6_len_1873_ver_3 24 KWTPAENKAFENALAVFDKDtpdRWQRVADMVP-GKTVLDVIRQYRE 69 8******************************.*****999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.8E-9	21	73	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.23E-12	23	78	IPR009057	Homeodomain-like
Pfam	PF00249	7.9E-7	24	69	IPR001005	SANT/Myb domain
CDD	cd00167	7.13E-7	24	70	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MEILSPSSYS SNSSWLYEES KSTKWTPAEN KAFENALAVF DKDTPDRWQR VADMVPGKTV 60 LDVIRQYREL EDDVSSIEAG LVPLPGYNTT SPFTLEWGNG HGFDGLKINS YAPTGKRSSS 120 TRPSSDHERK KGVPWTEEEH K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	7e-19	25	90	11	76	RADIALIS
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027110574.1	1e-73	transcription factor DIVARICATA-like isoform X1
Swissprot	Q8S9H7	8e-67	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A068UL31	3e-72	A0A068UL31_COFCA; Uncharacterized protein
STRING	XP_006488482.1	4e-69	(Citrus sinensis)
STRING	XP_006425017.1	4e-69	(Citrus clementina)

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]