PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_53502_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 135aa    MW: 15675.6 Da    PI: 8.687
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_53502_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.42.6e-301161151
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                         krien++nrqvtfskRr+g+lKKA+E+SvLCdaev +i+fs++gkl+eys+
  cra_locus_53502_iso_1_len_403_ver_3 11 KRIENTINRQVTFSKRRAGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYST 61
                                         79***********************************************96 PP
2K-box58.43e-2078135259
                                K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLe 59 
                                          ++++ ++++ ++  s++ e+akLk+++e Lqr+qRh+ GedL+sLs+keLq+Le+qL+
  cra_locus_53502_iso_1_len_403_ver_3  78 AERQLNATAIETPGSWTLEHAKLKARLEVLQRNQRHYAGEDLDSLSMKELQNLEHQLD 135
                                          667777778888999*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-40362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.268363IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-34489IPR002100Transcription factor, MADS-box
CDDcd002653.58E-43481No hitNo description
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-31525IPR002100Transcription factor, MADS-box
PfamPF003195.5E-251259IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-312540IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-314061IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.0790135IPR002487Transcription factor, K-box
PfamPF014861.1E-1392135IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
XNMGRGKVEL KRIENTINRQ VTFSKRRAGL LKKAHEISVL CDAEVGLIVF STKGKLFEYS  60
TDSCMERILE RYERYSYAER QLNATAIETP GSWTLEHAKL KARLEVLQRN QRHYAGEDLD  120
SLSMKELQNL EHQLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A8e-23389187MEF2 CHIMERA
6bz1_B8e-23389187MEF2 CHIMERA
6bz1_C8e-23389187MEF2 CHIMERA
6bz1_D8e-23389187MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238190.11e-88PREDICTED: agamous-like MADS-box protein AGL8 homolog
SwissprotQ424292e-82AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A482A2Y51e-87A0A482A2Y5_9SOLA; FRUITFUL-like protein (Fragment)
STRINGXP_009792071.14e-88(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]