PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5362_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 1830aa MW: 201050 Da PI: 7.827

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5362_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.4	5.3e-11	1762	1793	17	48
HHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 17 kqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 kq+G+g +Wk+Ia++m+ gR++ qc rwqk+l cra_locus_5362_iso_4_len_5865_ver_3 1762 KQFGNGrNWKKIAEYMP-GRSDVQCLQRWQKVL 1793 6999999********.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15044	9.9E-8	49	120	IPR028275	Clustered mitochondria protein, N-terminal
Pfam	PF12807	6.2E-25	726	867	IPR033646	CLU central domain
CDD	cd15466	2.84E-40	728	868	IPR033646	CLU central domain
Gene3D	G3DSA:1.25.40.10	1.6E-20	897	1112	IPR011990	Tetratricopeptide-like helical domain
SuperFamily	SSF48452	4.43E-13	903	1007	IPR011990	Tetratricopeptide-like helical domain
Pfam	PF13424	5.9E-13	937	1007	No hit	No description
SMART	SM00028	0.079	938	971	IPR019734	Tetratricopeptide repeat
PROSITE profile	PS50005	8.85	938	971	IPR019734	Tetratricopeptide repeat
PROSITE profile	PS50293	11.922	938	1055	IPR013026	Tetratricopeptide repeat-containing domain
SuperFamily	SSF48452	4.69E-11	975	1099	IPR011990	Tetratricopeptide-like helical domain
SMART	SM00028	250	980	1013	IPR019734	Tetratricopeptide repeat
PROSITE profile	PS50005	5.9	980	1013	IPR019734	Tetratricopeptide repeat
Pfam	PF13424	1.1E-10	1021	1095	No hit	No description
SMART	SM00028	31	1022	1055	IPR019734	Tetratricopeptide repeat
PROSITE profile	PS50005	6.343	1022	1055	IPR019734	Tetratricopeptide repeat
SuperFamily	SSF46689	4.79E-9	1743	1796	IPR009057	Homeodomain-like
SMART	SM00717	6.5E-6	1743	1795	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	9.691	1757	1797	IPR017930	Myb domain
CDD	cd00167	3.77E-7	1762	1793	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.6E-9	1762	1796	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-8	1762	1793	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1830 aa Download sequence Send to blast
MAPKSGRGKG NKAKASDKKK KEEKVVPSVL DITVITPYET QVILKGISTD KILDVKKLIA 60 ANVETCHLTN YSLSHEVKGQ KLNDKMEVVT LKPCLLRMVE EDYSEGSQAV AHVRRILDIV 120 ACTTRFGKSK GGSGRANAAA YSAASPSPTA ASAGAESRAK KNNKAQSSSR PSSPINGEVR 180 APGTPAPPVA EGYDMVAIHP IPKLSDFYEF FNFSHLTPPI LSLKRMNRKD GENGREGDHF 240 EMQIKICNGK LIQVVASTKG FYTTGKQFLQ SHSLVDLLQQ LSQAFANAYD SLMKAFMEHN 300 KFGNLPYGFR ANTWLVPPSV SDTASDFVPL PTEDENWGGN GGGQGRHGEY DLRPWASDFA 360 ILASLPCKTE EERVVRDRKA FLLHNLFVEV STLKAVSAIG EVMDSIAKGQ SPLGSVMHED 420 RLGDLFITVK RDDADASLKT AVKTIGSRTS DESSTEVAQR NLLKGVIADE SVVVHDTSSL 480 GVVVVRHCGY TATVKVVGDV KKQKNLRQDI EINDQPEGGA NALNINSLRI LLHKSFTSEA 540 SGEGQSPNSN YINLEKSHIL VQKVVRDSLD KLSKEDIPDR SIRWELGSCW VQHLQKQETP 600 AENSSKMSGG DKKSEPVVKG LGKKFKMLKN RERKPNSSSC VDDNVENNSK VSSTNDESTA 660 AELHNAESES ETELRKIIPK EAYLRLRETG TGLHTKSVNE LVQLAHKYYD EVALPKLVTD 720 FASLELSPVD GRTLTDFMHL RGLQMRSLGR VVELAEKLPH IQSLCIHEMI TRAFKHILKA 780 VIASVDSKAD LPAAIAASLN FLLGSCIIGD NQKYSDVQIL NLEWLRTFLE KRFCWKLNDE 840 FPKLRKLSIL RGLCHKVGLE LAPRDYDMGS PDPFRPSDII SLVPVCKHVG CSSADGRNLL 900 ESSKIALDKG KLEDAVNYGT KALAKMIAVC GPYHRTTASA YSLLAVVLYH TGDFNQATIY 960 QQKALDINER ELGLDHPDTM KSYGDLSVFY YRLQHIELAL KYVNRALFLL HFTCGLSHPN 1020 TAATYINVAM MEEGMGNVHV ALRYLHEALK CNQRLLGADH IQTAASYHAI AIALSLMEAY 1080 SLSVQHEQTT LQILQAKLGL DDLRTQDAAA WLEYFESKAL EQQEAARNGT PKPDASIASK 1140 GHLSVSDLLD YISPDQDSRA IDAQRKRRAK VMPVADKSQQ GQQAEGSNES TTGNETDITV 1200 SKLESNRVET KVENVSVEEP MRKNSSIKDP PVIEEASLEV SSDEGWQEAN SKGRSGSGAG 1260 RKFNRRRPNL AKIKVNSEFN SLGDRNYGKE VTPQGHKAMP KTVSLQVSLQ KHSKAAGMGT 1320 VEDLGKLPTK ALDPRVSPTS ISKVSSGSTT LTAIASKSLS YKDVAVAAPG TVLKPLLEKV 1380 EELKEAKTDT PFSTSTLETS ENEIESVAVD DRSPDHEDTG RVDAGEVHES DTKEDNSSPE 1440 FEDDSSSPND QEKCAETNGS KLSASAQPFS PGAYPLIHPI NSVAPTSVYD VIASQGMLTE 1500 PVSFPSVAAR VPCGPRSPMY YRGNHTFRMK HGFLNYQFPV SEQSAFPSAR IMNPHAPEFV 1560 PRRAWQPNTT TEGSRIATSD SSVDSNPSDP EVSSDEKHDK KDMLEVKGDR PKKSSSDAEK 1620 AELARQILLS FIVKSVKHSS DTPNESPVSE KKPDQFTGNS AEAVANDSAI IKILYGNEGK 1680 TEMVSEAKQN KQTKDADAND GEGFVVVTKR RRNRQHFANG IGLYNQQSIC ASVRXTNWTM 1740 RRACSKFSPD SDMKMDGKTS KKQFGNGRNW KKIAEYMPGR SDVQCLQRWQ KVLNPTPALN 1800 LHHPPILASG ISNSPQAIRR HQEKTGHIQP

Sequence ? help Back to Top

Protein Sequence Length: 1830 aa Download sequence Send to blast

MAPKSGRGKG NKAKASDKKK KEEKVVPSVL DITVITPYET QVILKGISTD KILDVKKLIA  60
ANVETCHLTN YSLSHEVKGQ KLNDKMEVVT LKPCLLRMVE EDYSEGSQAV AHVRRILDIV  120
ACTTRFGKSK GGSGRANAAA YSAASPSPTA ASAGAESRAK KNNKAQSSSR PSSPINGEVR  180
APGTPAPPVA EGYDMVAIHP IPKLSDFYEF FNFSHLTPPI LSLKRMNRKD GENGREGDHF  240
EMQIKICNGK LIQVVASTKG FYTTGKQFLQ SHSLVDLLQQ LSQAFANAYD SLMKAFMEHN  300
KFGNLPYGFR ANTWLVPPSV SDTASDFVPL PTEDENWGGN GGGQGRHGEY DLRPWASDFA  360
ILASLPCKTE EERVVRDRKA FLLHNLFVEV STLKAVSAIG EVMDSIAKGQ SPLGSVMHED  420
RLGDLFITVK RDDADASLKT AVKTIGSRTS DESSTEVAQR NLLKGVIADE SVVVHDTSSL  480
GVVVVRHCGY TATVKVVGDV KKQKNLRQDI EINDQPEGGA NALNINSLRI LLHKSFTSEA  540
SGEGQSPNSN YINLEKSHIL VQKVVRDSLD KLSKEDIPDR SIRWELGSCW VQHLQKQETP  600
AENSSKMSGG DKKSEPVVKG LGKKFKMLKN RERKPNSSSC VDDNVENNSK VSSTNDESTA  660
AELHNAESES ETELRKIIPK EAYLRLRETG TGLHTKSVNE LVQLAHKYYD EVALPKLVTD  720
FASLELSPVD GRTLTDFMHL RGLQMRSLGR VVELAEKLPH IQSLCIHEMI TRAFKHILKA  780
VIASVDSKAD LPAAIAASLN FLLGSCIIGD NQKYSDVQIL NLEWLRTFLE KRFCWKLNDE  840
FPKLRKLSIL RGLCHKVGLE LAPRDYDMGS PDPFRPSDII SLVPVCKHVG CSSADGRNLL  900
ESSKIALDKG KLEDAVNYGT KALAKMIAVC GPYHRTTASA YSLLAVVLYH TGDFNQATIY  960
QQKALDINER ELGLDHPDTM KSYGDLSVFY YRLQHIELAL KYVNRALFLL HFTCGLSHPN  1020
TAATYINVAM MEEGMGNVHV ALRYLHEALK CNQRLLGADH IQTAASYHAI AIALSLMEAY  1080
SLSVQHEQTT LQILQAKLGL DDLRTQDAAA WLEYFESKAL EQQEAARNGT PKPDASIASK  1140
GHLSVSDLLD YISPDQDSRA IDAQRKRRAK VMPVADKSQQ GQQAEGSNES TTGNETDITV  1200
SKLESNRVET KVENVSVEEP MRKNSSIKDP PVIEEASLEV SSDEGWQEAN SKGRSGSGAG  1260
RKFNRRRPNL AKIKVNSEFN SLGDRNYGKE VTPQGHKAMP KTVSLQVSLQ KHSKAAGMGT  1320
VEDLGKLPTK ALDPRVSPTS ISKVSSGSTT LTAIASKSLS YKDVAVAAPG TVLKPLLEKV  1380
EELKEAKTDT PFSTSTLETS ENEIESVAVD DRSPDHEDTG RVDAGEVHES DTKEDNSSPE  1440
FEDDSSSPND QEKCAETNGS KLSASAQPFS PGAYPLIHPI NSVAPTSVYD VIASQGMLTE  1500
PVSFPSVAAR VPCGPRSPMY YRGNHTFRMK HGFLNYQFPV SEQSAFPSAR IMNPHAPEFV  1560
PRRAWQPNTT TEGSRIATSD SSVDSNPSDP EVSSDEKHDK KDMLEVKGDR PKKSSSDAEK  1620
AELARQILLS FIVKSVKHSS DTPNESPVSE KKPDQFTGNS AEAVANDSAI IKILYGNEGK  1680
TEMVSEAKQN KQTKDADAND GEGFVVVTKR RRNRQHFANG IGLYNQQSIC ASVRXTNWTM  1740
RRACSKFSPD SDMKMDGKTS KKQFGNGRNW KKIAEYMPGR SDVQCLQRWQ KVLNPTPALN  1800
LHHPPILASG ISNSPQAIRR HQEKTGHIQP

Functional Description ? help Back to Top
Source	Description
UniProt	Negatively regulates meristematic tissue proliferation by integrating developmental signals with carbon source availability. May act as the scaffold of a protein complex, which sequesters key factors that are required for the G2 to M transition in meristematic tissues. {ECO:0000269\|PubMed:21185286}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by sucrose. {ECO:0000269\|PubMed:21185286}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027167520.1	0.0	protein TSS isoform X2
Swissprot	F4JKH6	0.0	TSS_ARATH; Protein TSS
TrEMBL	A0A068TQB7	0.0	A0A068TQB7_COFCA; Uncharacterized protein
STRING	Migut.I00746.1.p	0.0	(Erythranthe guttata)

Publications ? help Back to Top
Minglin L,Yuxiu Z,Tuanyao C Identification of genes up-regulated in response to Cd exposure in Brassica juncea L. Gene, 2005. 363: p. 151-8 [PMID:16226851] Larkin RM, et al. REDUCED CHLOROPLAST COVERAGE genes from Arabidopsis thaliana help to establish the size of the chloroplast compartment. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(8): p. E1116-25 [PMID:26862170]